Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2063 ATGAGTTCAATGTTTGATGAGACTGCTCCGGGGCCGGACACCGCCCTATCTTCACCGGCCGCTCCATCGCCGGATGAGTCGTCGTCGTCGTCGTCGTCATCGTCATCGTCTTCACAGCAGTCTCCCAATGGCGATGGCGATTACTCTCCACCACCATCGCCAACAAATGAGGATGACTCCAATTCCTCACGATCTCCATCAGAAGAAGCTCCAGCACCAAGGTCGCGGTCGAGAGGGTCTTCCGATGATAACAAATCCCGTTCATCTCCAAAAGCGAGCAGTCCACGTTCATCGTCGGACGATTCTGATTCTCCTCCATCTCGATCTTCATCACCTGCAGATGCATTGCCTCCACCAGATTCGACCGAAGGAAAGACATCACCGAGATCGTCGGGTGGCGCAAAACTTCATGGATCGTCATCGGAGTCCGATTCACCGTCGTCGGATGTCAATGCAGGAGTTATAATTGGGGTGGCATTGGGGGTGGGAGTACTCATAATTGCTCTCATATCATTAATTGCATTGTGTACGAGGAAGAAGAAGAGGAAGGGAGATCCTATGCAATATTATGGAGATCATGGTGGTGACTATTACAACAGTTCACAACAACAAAACTGGCACAACGGCATGCACGGCCCCGGTCCCGGTCCCGGTCCGGGGACGGACCAATTCGGGAGGCCACCGGTATCGGGGTCGCCGCCAGGGAGCGGGTGGCCGATGAATAGCGAGAACATGACGACGAGCAGCAGCTACACGGGTGGCCCTCCTCTTCCTCCGCCATCACCGTCGATAGCCTTTGGGTTCAACAAGAGCACATTCACGTACGATGAGCTCGCAGCGGCAACGGGCGGGTTTGCGCACGGGAACCTGCTCGGGCAGGGCGGGTTCGGGTACGTGCACAAGGGGGTGCTGCCGAACGGGAAGGAGGTGGCGGTGAAGAGCCTGAAGTCGGGCAGTGGGCAAGGGGAGAGGGAGTTCATGGCTGAGGTTGAGATTATTAGTAGAGTCCACCACCGGCATTTGGTGTCCTTGGTTGGCTTTTGCATTGCCGGTGGACAAAGAATGTTGGTCTATGAGTTTGTCCCTAACAACACCTTGGAGCATCACCTTCATGGTAAAGGTCTCCCAGTAATGAATTGGCCATCTAGACTTCGTATTGCTATCGGTTCTGCCAAGGGTCTCGCTTACCTTCACGAAGATTGTCATCCAAAGATTATTCATCGAGATATCAAGTCGGCTAATATTCTGATTGATGCCAACTTTGAAGCAATGGTGGCAGATTTTGGATTGGCTAAACTATCTTCAGATAATCATACTCACGTCTCCACTAGGGTTATGGGTACATTTGGGTATCTGGCACCAGAATATGCATCAAGTGGGAAGTTGACAGAGAAGTCCGATGTGTTCTCATTTGGTGTAATGTTATTGGAACTCATCACTGGAAAACGACCCGTTGATCCCACTCACACCATGGAGGATAGCTTAGTCGACTGGGCTCGACCACTTATGAGTCGGGCATTGATGGAAGGCATCTACGAAGAGTTGGTGGATATACGGTTAGATAACGAGTTCAACACTCAGGAGATGGCTCGTATGGTAGCTTGTGCTGCTGCCTCCATCCGTCACTCGGCTAGAAAACGCCCCAAAATGAGTCAGGTAGTACGAGCTTTAGAAGGAGATGTATCATTGGATGATCTGAACGAAGGGATAAGACCAGGACAAAGCTCCATTTACAGTGGGACGAGCTCAGAGTACGACACGAGTGCGTACCATGCCGACATGTCGAAATTCAGGAAGTTAGCTTTGTCGGACGACAGCAGCGAGCTCGGAACTTCTAGCAATGACTCGAGAGAGATGAACCATCCTGGAGCCCAAAGACCACTCTTTTGA 1890 51.69 MSSMFDETAPGPDTALSSPAAPSPDESSSSSSSSSSSSQQSPNGDGDYSPPPSPTNEDDSNSSRSPSEEAPAPRSRSRGSSDDNKSRSSPKASSPRSSSDDSDSPPSRSSSPADALPPPDSTEGKTSPRSSGGAKLHGSSSESDSPSSDVNAGVIIGVALGVGVLIIALISLIALCTRKKKRKGDPMQYYGDHGGDYYNSSQQQNWHNGMHGPGPGPGPGTDQFGRPPVSGSPPGSGWPMNSENMTTSSSYTGGPPLPPPSPSIAFGFNKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHGKGLPVMNWPSRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSSDNHTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPTHTMEDSLVDWARPLMSRALMEGIYEELVDIRLDNEFNTQEMARMVACAAASIRHSARKRPKMSQVVRALEGDVSLDDLNEGIRPGQSSIYSGTSSEYDTSAYHADMSKFRKLALSDDSSELGTSSNDSREMNHPGAQRPLF 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39108611 39116048 + Lag0019147.1 Lac5g2063 608705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2063 629 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 112 599 IPR047117 -
Lac5g2063 629 MobiDBLite consensus disorder prediction 603 629 - -
Lac5g2063 629 SUPERFAMILY Protein kinase-like (PK-like) 259 557 IPR011009 -
Lac5g2063 629 Pfam Protein tyrosine and serine/threonine kinase 289 555 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2063 629 MobiDBLite consensus disorder prediction 53 70 - -
Lac5g2063 629 FunFam Proline-rich receptor-like protein kinase PERK1 361 568 - -
Lac5g2063 629 MobiDBLite consensus disorder prediction 605 620 - -
Lac5g2063 629 SMART serkin_6 285 546 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2063 629 MobiDBLite consensus disorder prediction 194 258 - -
Lac5g2063 629 FunFam proline-rich receptor-like protein kinase PERK1 263 360 - -
Lac5g2063 629 ProSiteProfiles Protein kinase domain profile. 285 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2063 629 Gene3D Transferase(Phosphotransferase) domain 1 361 568 - -
Lac5g2063 629 MobiDBLite consensus disorder prediction 1 148 - -
Lac5g2063 629 MobiDBLite consensus disorder prediction 235 252 - -
Lac5g2063 629 Gene3D Phosphorylase Kinase; domain 1 261 360 - -
Lac5g2063 629 MobiDBLite consensus disorder prediction 86 116 - -
Lac5g2063 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2063 629 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524(InterPro)
Lac5g2063 629 MobiDBLite consensus disorder prediction 123 148 - -
Lac5g2063 629 MobiDBLite consensus disorder prediction 20 46 - -
Lac5g2063 629 CDD STKc_IRAK 291 559 - -
Lac5g2063 629 MobiDBLite consensus disorder prediction 195 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2063 Lac-Chr5:39108611 Lac9g1665 Lac-Chr9:36012322 1.50E-163 dispersed
Lac1g2984 Lac-Chr1:50566475 Lac5g2063 Lac-Chr5:39108611 1.20E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86205 PF07714 PK_Tyr_Ser-Thr 7.80E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2063 - - - 0.0