Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2067 | ATGAACAACCACCAAGAAGCTGAAGAGCATCAACCAGTACAAATCTCTCAGTTGTACACTGGATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGACAAAACCGAGACGGCGTCGTAAGAAGAACAGAGGGTCGGAGGCGGCGGCGGCGGATGCGGTGGCGAAGAAGAGGAAGCTGACGGCGGCGCAAGTTCATCTCTTGGAGACGAATTTCGGGAGTGAACACAAGTTGGAGTCGGAGAGAAAGGACCGTTTGGCGTCGGAGCTGGGGCTGGATCCCCGGCAGGTGGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTCGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACTGAGATACTGAAGCTGAAAGAACAACTTTGGGAAGTGGAGAAAGAGAAAGAGAGGGTGATAATGGCAGAACGGGCCGATGGGCCTTTAAGCAGCAGCCCAAGCCCATCAATGTCAATGGACGCCGTGGACCCCACATGCCTTGGAGAATTTGGAGTCATGGAAGAAGGATCCTTCGAATTCGAAGATGTGTTTTATTACATGCCTGATAATTCTTGCATTTATGGCATGGAATGGCCTAATCCCTACATTTGA | 666 | 50.0 | MNNHQEAEEHQPVQISQLYTGLYIQMVPQQGNLGETKPRRRRKKNRGSEAAAADAVAKKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLWEVEKEKERVIMAERADGPLSSSPSPSMSMDAVDPTCLGEFGVMEEGSFEFEDVFYYMPDNSCIYGMEWPNPYI | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39191312 | 39193378 | - | Lag0019151.1 | Lac5g2067 | 608709 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2067 | 221 | ProSitePatterns | 'Homeobox' domain signature. | 88 | 111 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac5g2067 | 221 | SMART | HOX_1 | 56 | 117 | IPR001356 | GO:0003677(InterPro) | |
Lac5g2067 | 221 | MobiDBLite | consensus disorder prediction | 29 | 55 | - | - | |
Lac5g2067 | 221 | SUPERFAMILY | Homeodomain-like | 58 | 121 | IPR009057 | - | |
Lac5g2067 | 221 | Coils | Coil | 105 | 132 | - | - | |
Lac5g2067 | 221 | Gene3D | - | 49 | 122 | - | - | |
Lac5g2067 | 221 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 41 | 159 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Lac5g2067 | 221 | Pfam | Homeodomain | 59 | 112 | IPR001356 | GO:0003677(InterPro) | |
Lac5g2067 | 221 | CDD | homeodomain | 58 | 114 | IPR001356 | GO:0003677(InterPro) | |
Lac5g2067 | 221 | ProSiteProfiles | 'Homeobox' domain profile. | 53 | 113 | IPR001356 | GO:0003677(InterPro) | |
Lac5g2067 | 221 | PRINTS | Lambda-repressor HTH signature | 84 | 93 | IPR000047 | GO:0003677(InterPro) | |
Lac5g2067 | 221 | PRINTS | Lambda-repressor HTH signature | 93 | 109 | IPR000047 | GO:0003677(InterPro) | |
Lac5g2067 | 221 | FunFam | homeobox-leucine zipper protein ATHB-40 | 52 | 121 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2890 | Lac-Chr1:49818111 | Lac5g2067 | Lac-Chr5:39191312 | 1.60E-48 | dispersed | |
Lac5g2067 | Lac-Chr5:39191312 | Lac8g2600 | Lac-Chr8:43637896 | 4.00E-18 | dispersed | |
Lac5g2067 | Lac-Chr5:39191312 | Lac10g0375 | Lac-Chr10:2929338 | 1.90E-20 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23870 | PF00046 | Homeodomain | 7.00E-17 | CL0123 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g2067 | K09338 | - | csv:101221080 | 335.495 |