Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2067 ATGAACAACCACCAAGAAGCTGAAGAGCATCAACCAGTACAAATCTCTCAGTTGTACACTGGATTATACATCCAAATGGTACCCCAACAAGGTAATTTGGGTGAGACAAAACCGAGACGGCGTCGTAAGAAGAACAGAGGGTCGGAGGCGGCGGCGGCGGATGCGGTGGCGAAGAAGAGGAAGCTGACGGCGGCGCAAGTTCATCTCTTGGAGACGAATTTCGGGAGTGAACACAAGTTGGAGTCGGAGAGAAAGGACCGTTTGGCGTCGGAGCTGGGGCTGGATCCCCGGCAGGTGGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTCGAGGAGGAGTATTCTAACTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACTGAGATACTGAAGCTGAAAGAACAACTTTGGGAAGTGGAGAAAGAGAAAGAGAGGGTGATAATGGCAGAACGGGCCGATGGGCCTTTAAGCAGCAGCCCAAGCCCATCAATGTCAATGGACGCCGTGGACCCCACATGCCTTGGAGAATTTGGAGTCATGGAAGAAGGATCCTTCGAATTCGAAGATGTGTTTTATTACATGCCTGATAATTCTTGCATTTATGGCATGGAATGGCCTAATCCCTACATTTGA 666 50.0 MNNHQEAEEHQPVQISQLYTGLYIQMVPQQGNLGETKPRRRRKKNRGSEAAAADAVAKKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETEILKLKEQLWEVEKEKERVIMAERADGPLSSSPSPSMSMDAVDPTCLGEFGVMEEGSFEFEDVFYYMPDNSCIYGMEWPNPYI 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39191312 39193378 - Lag0019151.1 Lac5g2067 608709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2067 221 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac5g2067 221 SMART HOX_1 56 117 IPR001356 GO:0003677(InterPro)
Lac5g2067 221 MobiDBLite consensus disorder prediction 29 55 - -
Lac5g2067 221 SUPERFAMILY Homeodomain-like 58 121 IPR009057 -
Lac5g2067 221 Coils Coil 105 132 - -
Lac5g2067 221 Gene3D - 49 122 - -
Lac5g2067 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 159 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lac5g2067 221 Pfam Homeodomain 59 112 IPR001356 GO:0003677(InterPro)
Lac5g2067 221 CDD homeodomain 58 114 IPR001356 GO:0003677(InterPro)
Lac5g2067 221 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677(InterPro)
Lac5g2067 221 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677(InterPro)
Lac5g2067 221 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677(InterPro)
Lac5g2067 221 FunFam homeobox-leucine zipper protein ATHB-40 52 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2890 Lac-Chr1:49818111 Lac5g2067 Lac-Chr5:39191312 1.60E-48 dispersed
Lac5g2067 Lac-Chr5:39191312 Lac8g2600 Lac-Chr8:43637896 4.00E-18 dispersed
Lac5g2067 Lac-Chr5:39191312 Lac10g0375 Lac-Chr10:2929338 1.90E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23870 PF00046 Homeodomain 7.00E-17 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2067 K09338 - csv:101221080 335.495