Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2072 ATGGAATGTCTCGATGCGGCTCTCAAAACCTGTTTCCGCAACGATATTTCCCTTCAATTGACCCCTCAACTCTCTTTTCACGATCATACCGCCTCTTTTCATCCCCAGAATGTCGTCTCCTCTGATGATTTCTTCGTTGATCAACTCCTTGATTTCTCTAATGACGATCAGTTTGTACAACAGGACGAGATTGCTCACGAGGATGATGACGATAAGGCCTCTGTTTCGCTTTCCATTTCCCTCTCCGCTCAAGAACAACGCCAGAACTCCCTACTTTCCGACCTTCCTTCCTTGCCCTCCGGCGCGGCGGATGATTTGGCCAACCTTGAATGGCTGTCCCATTTCGTTGAGGATTCCTTCTCTGGATTCTCCGCTCCCTTCCCCTCCGCCGGAATTTCTTCGTCCATGAAATCGTCCCCCGCGGAGGAGCAACCGGACAACGACGGTTCCGTTTCGCCACCGGAGCCCTGTTTCAAGACGCCCGTTCCGGTCAAGGCTCGAAGCAAACGGACGAGAACCGGCGGCCGAGTTTGGTGCCTCGCTTCACCGTCGTTGACCGAGTCTTCCTCCAGTTCCACCACGTCCTCCTCTTCCTCGTCGCCGGCGGGTCCTTGGCTTATAATTTCCGACCGATTCGAACCGGAAATTCCGGTAACCAAGAAACCCAAGAGAAAGTCGCCGCTGGAAAACGCCAGAACCGTCGCCGGAGCCCAGCCGCCTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCCCTCGGAGCAAAAACTCTCTGCAACGCTTGCGGCGTACGGTTCAAATCGGGTCGACTTTTACCCGAATACCGACCCGCCTGCAGCCCGACTTTCTCCAGCGAATTGCACTCCAACCATCACCGGAAAGTCCTCGAGATGCGCCGGAAAAAGGAAACCACCGCCCCCGCCGAGTTTTTGACCTCAGAAAAAGAATAA 969 55.21 MECLDAALKTCFRNDISLQLTPQLSFHDHTASFHPQNVVSSDDFFVDQLLDFSNDDQFVQQDEIAHEDDDDKASVSLSISLSAQEQRQNSLLSDLPSLPSGAADDLANLEWLSHFVEDSFSGFSAPFPSAGISSSMKSSPAEEQPDNDGSVSPPEPCFKTPVPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSPAGPWLIISDRFEPEIPVTKKPKRKSPLENARTVAGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETTAPAEFLTSEKE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39260596 39261665 - Lag0019156.1 Lac5g2072 608714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2072 322 MobiDBLite consensus disorder prediction 131 169 - -
Lac5g2072 322 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 PANTHER GATA TRANSCRIPTION FACTOR 43 309 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lac5g2072 322 FunFam GATA transcription factor 233 318 - -
Lac5g2072 322 MobiDBLite consensus disorder prediction 185 204 - -
Lac5g2072 322 MobiDBLite consensus disorder prediction 131 146 - -
Lac5g2072 322 SMART GATA_3 237 291 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 MobiDBLite consensus disorder prediction 219 244 - -
Lac5g2072 322 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 PIRSF Txn_fac_GATA_plant 13 321 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lac5g2072 322 Gene3D - 235 312 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lac5g2072 322 Pfam GATA zinc finger 243 277 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 MobiDBLite consensus disorder prediction 185 205 - -
Lac5g2072 322 CDD ZnF_GATA 242 290 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2072 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2072 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2072 Lac-Chr5:39260596 Lac6g1069 Lac-Chr6:9819987 5.20E-35 dispersed
Lac10g0736 Lac-Chr10:5719956 Lac5g2072 Lac-Chr5:39260596 1.20E-19 transposed
Lac6g2669 Lac-Chr6:44435948 Lac5g2072 Lac-Chr5:39260596 1.30E-14 transposed
Lac9g1746 Lac-Chr9:37110476 Lac5g2072 Lac-Chr5:39260596 4.50E-42 transposed
Lac1g2916 Lac-Chr1:50009642 Lac5g2072 Lac-Chr5:39260596 3.10E-07 wgd
Lac1g2978 Lac-Chr1:50508340 Lac5g2072 Lac-Chr5:39260596 6.10E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g1069 . 81 371 C2C2-Gata Transcription Factor Family AT5G25830 53.1 1.1e-69 261.2
Lac5g2072 . 42 315 C2C2-Gata Transcription Factor Family AT3G51080 51.1 1.3e-54 211.1
Lac1g2978 . 108 284 C2C2-Gata Transcription Factor Family AT4G36240 51.4 5.2e-40 162.2
Lac5g0347 . 1 520 C2C2-Gata Transcription Factor Family AT4G17570 54.0 1.9e-135 480.3
Lac11g2336 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.4 7.1e-135 478.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23871 PF00320 GATA 4.10E-16 CL0167 Lac TF