Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2079 ATGCATTTCCGGAAACAGAACAAGGCGAGGCTGCCGCCGTCGGGGGCGCTGGGGAAGCAGGCGGTGGCGTTCAGAATATCGGGGGACGCGGCGGCGTTCATAAGCTGCAGGTTCATCGGCGCACAGGACACGCTGTACGACCACATGGGGCGGCACTACTTCAAGAATTGCTACATCGAGGGGTCGGTGGACTTCGTGTTCGGCGACGGGCTGTCCCTGTACGACGGCTGCCACTTGCACGCCATCACCGACAGCGACAGCTACGGCGCTCTGACTGCCCAGAAGAGGAACAGCCTGCTGGAGGAGACCGGGTTCTCGTTCCTCAACTGCAAGGTTTCCGGGTCGGGCGCTCTCTATTTGGGCCGGGCATGGGGCAGCTTCTCCAGAGTCATCTTCGCTTATACGTTCATGGACAAAATCATCACTCCCACTGGTTGGTACAACTGGGGCGACAAAAACCGAGAGCTGACTGTGTTTTATGGGCAATACAGGTGCTCGGGACCAGGAGCCGATTATGGAGGACGAGTTTCATGGTCCAGAGAACTCACTGAGTCACAAGCCAACCCTTTTCTCTCTCTTGATTTTATCAATGCAAACGAGTGGCTTCCAAAGCATACTCGTCTTGTCTTTAAACCTCGTTAA 642 56.07 MHFRKQNKARLPPSGALGKQAVAFRISGDAAAFISCRFIGAQDTLYDHMGRHYFKNCYIEGSVDFVFGDGLSLYDGCHLHAITDSDSYGALTAQKRNSLLEETGFSFLNCKVSGSGALYLGRAWGSFSRVIFAYTFMDKIITPTGWYNWGDKNRELTVFYGQYRCSGPGADYGGRVSWSRELTESQANPFLSLDFINANEWLPKHTRLVFKPR 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39361002 39361741 - Lag0019163.1 Lac5g2079 608721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2079 213 SUPERFAMILY Pectin lyase-like 15 204 IPR011050 -
Lac5g2079 213 Gene3D - 2 210 IPR012334 -
Lac5g2079 213 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 203 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Lac5g2079 213 Pfam Pectinesterase 14 198 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac5g2079 213 ProSitePatterns Pectinesterase signature 2. 59 68 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2079 Lac-Chr5:39361002 Lac6g0425 Lac-Chr6:3474344 1.10E-57 dispersed
Lac5g2079 Lac-Chr5:39361002 Lac11g0154 Lac-Chr11:1433242 1.60E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2079 K01051 - csv:101222494 398.667