Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2081 ATGGCCGGTTTTTTCCCACTAGGCAGCGGCGGCGGCGGTAGAGGACCCAATTATCACCTTCCCACCACCGGCGGCGGCGAGATCATTCATCCCACCGACGGGTTATTTTGGTACAAAAATTATGATAGCTTTGAAATTTGGCAGCAGCAACAGCAGCAGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCCGGCGATGAATCGCCGCCGAGATCGTCGTTGGTGATGGTGAGATCCGGCAGAGGCGGCGGTGGGCAAGTAATGAGCTGCCAAGACTGTGGAAATCAAGCCAAAAAAGATTGCCTTCACATGCGATGTAGAACTTGCTGCAAGAGCCGTGGCTATGACTGTGAAACCCACGTCAAAAGCACATGGGTTCCCGCCTCCAAACGCCGCGAGCGGCAGCTCCGCAGCGACGGAGCTAACCCCAAACGCCCCCGAGACCACAACAACGCCACTTCTTCAGGGTTGGAAATGGGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGATGCGTACGAATGACAACGTTGGACGAAACCAACGACCAATATGCTTATCAAACAGCTGTCAACATCGGAGGCCATATCTTCAAGGGAATTCTTTACGACCACGGCCCTGATCATCATCATCATCAACAACAACCACCCAACTCCGCCTCCCCCGACGGCGGCGCCCTCCTCATCACCGCCCCCTCCACCGCCGCAATCCCAACCACCGCCGAATCGCCACCCATCAGCGCCGCATTGCTTGATCCTCCTCCGCCGTACCCAACTCCTCTCAGCACCTACATCGCCGCCGGTACGCAATTTTTTCTTCCACCAACATCTTAG 840 55.83 MAGFFPLGSGGGGRGPNYHLPTTGGGEIIHPTDGLFWYKNYDSFEIWQQQQQQQQQAGEGFVYSGDESPPRSSLVMVRSGRGGGGQVMSCQDCGNQAKKDCLHMRCRTCCKSRGYDCETHVKSTWVPASKRRERQLRSDGANPKRPRDHNNATSSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPDHHHHQQQPPNSASPDGGALLITAPSTAAIPTTAESPPISAALLDPPPPYPTPLSTYIAAGTQFFLPPTS 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39421541 39422613 + Lag0019165.1 Lac5g2081 608723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2081 279 NCBIfam putative zinc finger domain, LRP1 type 89 131 IPR006510 -
Lac5g2081 279 MobiDBLite consensus disorder prediction 128 160 - -
Lac5g2081 279 NCBIfam LRP1 C-terminal domain 162 209 IPR006511 -
Lac5g2081 279 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 27 273 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Lac5g2081 279 MobiDBLite consensus disorder prediction 206 229 - -
Lac5g2081 279 MobiDBLite consensus disorder prediction 128 146 - -
Lac5g2081 279 Pfam Domain of unknown function (DUF702) 88 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2081 Lac-Chr5:39421541 Lac6g0467 Lac-Chr6:3845594 4.70E-40 dispersed
Lac1g2972 Lac-Chr1:50470992 Lac5g2081 Lac-Chr5:39421541 2.20E-49 wgd
Lac2g0177 Lac-Chr2:1334392 Lac5g2081 Lac-Chr5:39421541 8.70E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23873 PF05142 DUF702 1.70E-53 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2081 K27807 - csv:101216097 361.303