Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2081 | ATGGCCGGTTTTTTCCCACTAGGCAGCGGCGGCGGCGGTAGAGGACCCAATTATCACCTTCCCACCACCGGCGGCGGCGAGATCATTCATCCCACCGACGGGTTATTTTGGTACAAAAATTATGATAGCTTTGAAATTTGGCAGCAGCAACAGCAGCAGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCCGGCGATGAATCGCCGCCGAGATCGTCGTTGGTGATGGTGAGATCCGGCAGAGGCGGCGGTGGGCAAGTAATGAGCTGCCAAGACTGTGGAAATCAAGCCAAAAAAGATTGCCTTCACATGCGATGTAGAACTTGCTGCAAGAGCCGTGGCTATGACTGTGAAACCCACGTCAAAAGCACATGGGTTCCCGCCTCCAAACGCCGCGAGCGGCAGCTCCGCAGCGACGGAGCTAACCCCAAACGCCCCCGAGACCACAACAACGCCACTTCTTCAGGGTTGGAAATGGGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGATGCGTACGAATGACAACGTTGGACGAAACCAACGACCAATATGCTTATCAAACAGCTGTCAACATCGGAGGCCATATCTTCAAGGGAATTCTTTACGACCACGGCCCTGATCATCATCATCATCAACAACAACCACCCAACTCCGCCTCCCCCGACGGCGGCGCCCTCCTCATCACCGCCCCCTCCACCGCCGCAATCCCAACCACCGCCGAATCGCCACCCATCAGCGCCGCATTGCTTGATCCTCCTCCGCCGTACCCAACTCCTCTCAGCACCTACATCGCCGCCGGTACGCAATTTTTTCTTCCACCAACATCTTAG | 840 | 55.83 | MAGFFPLGSGGGGRGPNYHLPTTGGGEIIHPTDGLFWYKNYDSFEIWQQQQQQQQQAGEGFVYSGDESPPRSSLVMVRSGRGGGGQVMSCQDCGNQAKKDCLHMRCRTCCKSRGYDCETHVKSTWVPASKRRERQLRSDGANPKRPRDHNNATSSGLEMGNFPVEVSSTAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPDHHHHQQQPPNSASPDGGALLITAPSTAAIPTTAESPPISAALLDPPPPYPTPLSTYIAAGTQFFLPPTS | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39421541 | 39422613 | + | Lag0019165.1 | Lac5g2081 | 608723 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2081 | 279 | NCBIfam | putative zinc finger domain, LRP1 type | 89 | 131 | IPR006510 | - | |
Lac5g2081 | 279 | MobiDBLite | consensus disorder prediction | 128 | 160 | - | - | |
Lac5g2081 | 279 | NCBIfam | LRP1 C-terminal domain | 162 | 209 | IPR006511 | - | |
Lac5g2081 | 279 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 27 | 273 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Lac5g2081 | 279 | MobiDBLite | consensus disorder prediction | 206 | 229 | - | - | |
Lac5g2081 | 279 | MobiDBLite | consensus disorder prediction | 128 | 146 | - | - | |
Lac5g2081 | 279 | Pfam | Domain of unknown function (DUF702) | 88 | 210 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2081 | Lac-Chr5:39421541 | Lac6g0467 | Lac-Chr6:3845594 | 4.70E-40 | dispersed | |
Lac1g2972 | Lac-Chr1:50470992 | Lac5g2081 | Lac-Chr5:39421541 | 2.20E-49 | wgd | |
Lac2g0177 | Lac-Chr2:1334392 | Lac5g2081 | Lac-Chr5:39421541 | 8.70E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23873 | PF05142 | DUF702 | 1.70E-53 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g2081 | K27807 | - | csv:101216097 | 361.303 |