Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2087 ATGGCTCGATCTCGAAGCTCTCTCTTTGTTTTTGCTCTTCTTGCCTTGGCTTCGGTTTGTTTCTCTCACAAGACTGGCGGTGGCGGTGGCGGTTATGGCGGTTATTTGTATCCTCAATTCTATGATCATTCTTGTCCAAGAGCTCAAGAGATAGTGAAGTCCATTGTGGCCAAAGCTTTCGCTAAGGAAGCTCGTATTGCTGCTTCATTGCTTAGGCTTCATTTCCATGATTGTTTTGTTAAGGGCTGTGATGGTTCGATTTTGTTAGACAGCAGTGGGACAATAACCAGTGAGAAAAGGTCGAATCCAAACAGAAACTCTGCCAGAGGCTTTGAAGTCATTGATGAGATCAAATCTGCCTTGGAAAAGGAGTGTCCTCAAACTGTTTCTTGTGCTGATATCTTGGCCATTGCTGCAAGAGACTCCACCGTCATAACAGGAGGGCCTGGCTGGGAAGTTCCACTTGGAAGAAGGGACTCAAGAGGAGCAAGTCTAAGTGGCTCCAACAATGACATTCCTGCTCCAAACAACACATTCCAAACCATTCTCACCAAGTTCAAGAGACAAGGCCTTGACATTGTTGATCTTGTTGCTCTCTCAGGAAGCCACACGGTTGGAAACTCTCGATGCACTAGCTTCAGGCAACGGCTGTACAACCAATCCGGCAATGCCGAGCCCGACCCTTCTCTCGATCCATCGTACGCCGCTGAATTGCGCAAGCGATGCCCGAGATCGGGGGGTGACCAGAACCTGTTTTTCCTGGACTTTGTCAGCCCGACGAAGTTCGACAACTACTACTTCAAGAACCTTTTGGCTGGAAAGGGACTGCTGAACTCGGATGAGGTTCTGTTGACGAAGAATGAGCAATCGGCGGAGTTGGTGAGGACATATGCAGAGAATTCTGAGGTGTTTTTTGAGCAATTTGCCAAGTCAATGGTTAAGATGGGAAACATTTCTCCTCTGACTGGCTCAAGGGGTGAGATCAGAAAGAACTGCAGGAAAGTTAACAGAAATTAG 1017 47.49 MARSRSSLFVFALLALASVCFSHKTGGGGGGYGGYLYPQFYDHSCPRAQEIVKSIVAKAFAKEARIAASLLRLHFHDCFVKGCDGSILLDSSGTITSEKRSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILAIAARDSTVITGGPGWEVPLGRRDSRGASLSGSNNDIPAPNNTFQTILTKFKRQGLDIVDLVALSGSHTVGNSRCTSFRQRLYNQSGNAEPDPSLDPSYAAELRKRCPRSGGDQNLFFLDFVSPTKFDNYYFKNLLAGKGLLNSDEVLLTKNEQSAELVRTYAENSEVFFEQFAKSMVKMGNISPLTGSRGEIRKNCRKVNRN 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39510460 39511856 - Lag0019171.1 Lac5g2087 608729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2087 338 Pfam Peroxidase 52 300 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 Gene3D Peroxidase, domain 2 173 316 - -
Lac5g2087 338 ProSiteProfiles Plant heme peroxidase family profile. 35 336 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 Gene3D - 40 336 - -
Lac5g2087 338 SUPERFAMILY Heme-dependent peroxidases 36 336 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 CDD secretory_peroxidase 36 335 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac5g2087 338 PRINTS Haem peroxidase superfamily signature 129 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Haem peroxidase superfamily signature 147 159 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Haem peroxidase superfamily signature 255 270 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Haem peroxidase superfamily signature 67 81 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Haem peroxidase superfamily signature 195 210 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 ProSitePatterns Peroxidases active site signature. 67 78 IPR019794 GO:0004601(InterPro)
Lac5g2087 338 PRINTS Plant peroxidase signature 253 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Plant peroxidase signature 310 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Plant peroxidase signature 69 89 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Plant peroxidase signature 147 162 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Plant peroxidase signature 194 206 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Plant peroxidase signature 269 286 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Plant peroxidase signature 45 64 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Plant peroxidase signature 128 138 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 MobiDBLite consensus disorder prediction 150 171 - -
Lac5g2087 338 FunFam Peroxidase 173 315 - -
Lac5g2087 338 PANTHER PEROXIDASE 72-RELATED 11 335 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac5g2087 338 ProSitePatterns Peroxidases proximal heme-ligand signature. 195 205 IPR019793 -
Lac5g2087 338 FunFam Peroxidase 39 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0975 Lac-Chr11:10742419 Lac5g2087 Lac-Chr5:39510460 4.90E-82 dispersed
Lac1g2113 Lac-Chr1:42602555 Lac5g2087 Lac-Chr5:39510460 3.90E-54 dispersed
Lac4g2574 Lac-Chr4:44902679 Lac5g2087 Lac-Chr5:39510460 1.30E-68 dispersed
Lac5g2087 Lac-Chr5:39510460 Lac8g2856 Lac-Chr8:45719962 7.80E-90 dispersed
Lac11g2378 Lac-Chr11:39969472 Lac5g2087 Lac-Chr5:39510460 5.00E-89 transposed
Lac12g0049 Lac-Chr12:585511 Lac5g2087 Lac-Chr5:39510460 7.20E-60 transposed
Lac5g1970 Lac-Chr5:38109412 Lac5g2087 Lac-Chr5:39510460 1.60E-79 transposed
Lac1g2959 Lac-Chr1:50399663 Lac5g2087 Lac-Chr5:39510460 8.60E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2087 K00430 - csv:101223204 598.201