Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2093 ATGGCTACATTCGTCGAGCCACCGAACGGAATCAGGTCAATGGGGAAGCATTATTACACAATGTGGCAAACTCTGTTTGAAATTGATACTAAGTATGTTCCAATCAAGCCGATTGGACGAGGAGCTTACGGTGTGGTGTGTTCTTCGATCAACCGAGAAACCAACGAGAAGGTGGCGATCAAGAAGATTAACAATGTGTTTGAGAATCGCACTGACGCCATGAGAACGCTGAGGGAGCTGAAGCTTCTGAGGCACATAAGGCATGAGAACGTGATTGCTTTGAAGGATGTGATGATGCCGATCCATAGAAAAAGTTTTAAGGATGTGTATTTGGTTTATGAACTCATGGATACTGATCTTCATCAGATTATCAAATCCTCTCAGCCCCTTTCCAATGATCATTGCAAGTATTTTATCTATCAGTTGCTTTGCGGCTTGCAGTATCTTCATTCTGCAAACATTCTTCACCGGGACTTGAAGCCCGGGAACCTCCTCGTCAATGCTAACTGCGATCTGAAGATATGCGATTTCGGGCTGGCACGAACAAGCATAGGCCGTGACCAGTTCATGACTGAGTATGTTGTTACTCGCTGGTATCGTGCACCAGAGCTTCTCCTCTGCTGTGACAACTATGGGACTTCTATTGATGTATGGTCTGTAGGATGCATCTTTGCTGAGATCCTCGGTCGGCAACCTATCTTCCCGGGGACAGAGTGCCTCAACCAACTAAGCTTAATCATCAACATTCTCGGTAGTCCAAAGGAAGCGGATATCGAGTTCATCGACAATGCAAAGGCCAGAAAGTATATCAATGGCATGACCTTTTCGAGAGGAATACACCTTTCACATCTATATCCACACGCTGAACCTTTAGCGTTAGACTTGTTGCAGAAGATGCTTGTGTTTGATCCAACGAAGAGAATTACCGTCGACGAGGCACTTCAACATCCATACATGTCAGGGCTATACGACCCGAAATTCAATCCTCCAGCCGAGGTGCCCCTCACTCTTGACATCGACGAATCACTTGGGGAGCATAAGATCAGGGAAATGATGTTGAATGAGATGCTCTATTACCATCCTGAAGCCGTTCCAGCCTATTCTTGA 1107 45.71 MATFVEPPNGIRSMGKHYYTMWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKINNVFENRTDAMRTLRELKLLRHIRHENVIALKDVMMPIHRKSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFIYQLLCGLQYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSIGRDQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRQPIFPGTECLNQLSLIINILGSPKEADIEFIDNAKARKYINGMTFSRGIHLSHLYPHAEPLALDLLQKMLVFDPTKRITVDEALQHPYMSGLYDPKFNPPAEVPLTLDIDESLGEHKIREMMLNEMLYYHPEAVPAYS 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39574639 39576203 - Lag0019177.1 Lac5g2093 608735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2093 368 Gene3D Phosphorylase Kinase; domain 1 19 352 - -
Lac5g2093 368 FunFam Mitogen-activated protein kinase 18 126 - -
Lac5g2093 368 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524(InterPro)
Lac5g2093 368 CDD STKc_TEY_MAPK 26 361 - -
Lac5g2093 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2093 368 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2093 368 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Lac5g2093 368 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2093 368 SMART serkin_6 32 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2093 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 26 357 IPR050117 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lac5g2093 368 FunFam Mitogen-activated protein kinase 116 345 - -
Lac5g2093 368 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Lac5g2093 368 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2093 Lac-Chr5:39574639 Lac6g0444 Lac-Chr6:3627440 1.40E-169 dispersed
Lac5g2093 Lac-Chr5:39574639 Lac12g1654 Lac-Chr12:31883864 1.30E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86206 PF00069 Pkinase 4.50E-72 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2093 K20537 - csv:101203896 704.901