Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2113 | ATGAAAGATGGAATTGGGAGCATTTCAAAACGAGGAGAAGAAGGGAGTAGGCATTGGAGAAACCGCACAATGTCACATATTGCACCTGATCAAGAACCTTCACCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCTGAATTACTTTTAGATATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTGCCCGAGCTGTGGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGCATGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCTGGTACTGACTTTATCATATCTTTAGCAGCTGATGATTTCTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGAACGAAGTTCTCGATATATGACAGCCAGCCTCCTTGTGACCCTGCAGCCTGGCAAAATAGCCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATGTAACTACAGTGTAGGTACAATATCTTATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACGATTCCAGTCTCTTCGATTCAGGAGGGAGGCACTGCCCCAACCCCTACATCATTCACTTACTCTATCGATGACCAGCTTTCTTCCATGTCCCATTCTATGAGAAAGGATTCAGCCAAGGACTTTGGCCCGAAGACCCTATCAGAACCAGCCGTTCAGGGTTCGGATGAATCCCTGGTGCTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAACTTCAGAGGACGTGTGACCGTGGCATCCGTTAAGAACTTCCAACTCGTCGCAGCTGTCGATCAATCTCACAATGTTTCAGTGGAAGAACAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGATATCTTCACTATGGATTATCACTATCCTCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA | 1206 | 46.77 | MKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGMVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAWQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDQLSSMSHSMRKDSAKDFGPKTLSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 39768262 | 39770077 | - | Lag0019197.1 | Lac5g2113 | 608755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2113 | 401 | SUPERFAMILY | Tubby C-terminal domain-like | 93 | 401 | IPR025659 | - | |
Lac5g2113 | 401 | PRINTS | Tubby superfamily signature | 329 | 345 | IPR000007 | - | |
Lac5g2113 | 401 | PRINTS | Tubby superfamily signature | 159 | 175 | IPR000007 | - | |
Lac5g2113 | 401 | PRINTS | Tubby superfamily signature | 175 | 199 | IPR000007 | - | |
Lac5g2113 | 401 | PRINTS | Tubby superfamily signature | 379 | 401 | IPR000007 | - | |
Lac5g2113 | 401 | PRINTS | Tubby superfamily signature | 224 | 251 | IPR000007 | - | |
Lac5g2113 | 401 | PRINTS | Tubby superfamily signature | 358 | 377 | IPR000007 | - | |
Lac5g2113 | 401 | PRINTS | Tubby superfamily signature | 311 | 328 | IPR000007 | - | |
Lac5g2113 | 401 | Gene3D | - | 38 | 92 | - | - | |
Lac5g2113 | 401 | Pfam | F-box-like | 44 | 87 | IPR001810 | GO:0005515(InterPro) | |
Lac5g2113 | 401 | ProSitePatterns | Tub family signature 2. | 386 | 401 | IPR018066 | - | |
Lac5g2113 | 401 | CDD | F-box_AtTLP-like | 44 | 88 | - | - | |
Lac5g2113 | 401 | PANTHER | TUBBY-RELATED | 33 | 400 | - | - | |
Lac5g2113 | 401 | Pfam | Tub family | 105 | 396 | IPR000007 | - | |
Lac5g2113 | 401 | ProSitePatterns | Tub family signature 1. | 329 | 342 | IPR018066 | - | |
Lac5g2113 | 401 | Gene3D | Tubby Protein; Chain A | 102 | 401 | IPR025659 | - | |
Lac5g2113 | 401 | FunFam | Tubby-like F-box protein | 101 | 401 | - | - | |
Lac5g2113 | 401 | SUPERFAMILY | F-box domain | 38 | 88 | IPR036047 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g2379 | Lac-Chr12:40902928 | Lac5g2113 | Lac-Chr5:39768262 | 8.20E-123 | dispersed | |
Lac5g2113 | Lac-Chr5:39768262 | Lac7g0837 | Lac-Chr7:6759323 | 8.50E-120 | dispersed | |
Lac5g2537 | Lac-Chr5:43923210 | Lac5g2113 | Lac-Chr5:39768262 | 5.50E-125 | transposed | |
Lac8g1678 | Lac-Chr8:34901823 | Lac5g2113 | Lac-Chr5:39768262 | 1.30E-121 | transposed | |
Lac1g2922 | Lac-Chr1:50034842 | Lac5g2113 | Lac-Chr5:39768262 | 1.40E-173 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23876 | PF01167 | Tub | 1.90E-106 | CL0395 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g2113 | K19600 | - | csv:101205595 | 758.444 |