Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2113 ATGAAAGATGGAATTGGGAGCATTTCAAAACGAGGAGAAGAAGGGAGTAGGCATTGGAGAAACCGCACAATGTCACATATTGCACCTGATCAAGAACCTTCACCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCTGAATTACTTTTAGATATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTGCCCGAGCTGTGGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGCATGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCTGGTACTGACTTTATCATATCTTTAGCAGCTGATGATTTCTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGAACGAAGTTCTCGATATATGACAGCCAGCCTCCTTGTGACCCTGCAGCCTGGCAAAATAGCCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATGTAACTACAGTGTAGGTACAATATCTTATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACGATTCCAGTCTCTTCGATTCAGGAGGGAGGCACTGCCCCAACCCCTACATCATTCACTTACTCTATCGATGACCAGCTTTCTTCCATGTCCCATTCTATGAGAAAGGATTCAGCCAAGGACTTTGGCCCGAAGACCCTATCAGAACCAGCCGTTCAGGGTTCGGATGAATCCCTGGTGCTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAACTTCAGAGGACGTGTGACCGTGGCATCCGTTAAGAACTTCCAACTCGTCGCAGCTGTCGATCAATCTCACAATGTTTCAGTGGAAGAACAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGATATCTTCACTATGGATTATCACTATCCTCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1206 46.77 MKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGMVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAWQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDQLSSMSHSMRKDSAKDFGPKTLSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39768262 39770077 - Lag0019197.1 Lac5g2113 608755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2113 401 SUPERFAMILY Tubby C-terminal domain-like 93 401 IPR025659 -
Lac5g2113 401 PRINTS Tubby superfamily signature 329 345 IPR000007 -
Lac5g2113 401 PRINTS Tubby superfamily signature 159 175 IPR000007 -
Lac5g2113 401 PRINTS Tubby superfamily signature 175 199 IPR000007 -
Lac5g2113 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Lac5g2113 401 PRINTS Tubby superfamily signature 224 251 IPR000007 -
Lac5g2113 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Lac5g2113 401 PRINTS Tubby superfamily signature 311 328 IPR000007 -
Lac5g2113 401 Gene3D - 38 92 - -
Lac5g2113 401 Pfam F-box-like 44 87 IPR001810 GO:0005515(InterPro)
Lac5g2113 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
Lac5g2113 401 CDD F-box_AtTLP-like 44 88 - -
Lac5g2113 401 PANTHER TUBBY-RELATED 33 400 - -
Lac5g2113 401 Pfam Tub family 105 396 IPR000007 -
Lac5g2113 401 ProSitePatterns Tub family signature 1. 329 342 IPR018066 -
Lac5g2113 401 Gene3D Tubby Protein; Chain A 102 401 IPR025659 -
Lac5g2113 401 FunFam Tubby-like F-box protein 101 401 - -
Lac5g2113 401 SUPERFAMILY F-box domain 38 88 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2379 Lac-Chr12:40902928 Lac5g2113 Lac-Chr5:39768262 8.20E-123 dispersed
Lac5g2113 Lac-Chr5:39768262 Lac7g0837 Lac-Chr7:6759323 8.50E-120 dispersed
Lac5g2537 Lac-Chr5:43923210 Lac5g2113 Lac-Chr5:39768262 5.50E-125 transposed
Lac8g1678 Lac-Chr8:34901823 Lac5g2113 Lac-Chr5:39768262 1.30E-121 transposed
Lac1g2922 Lac-Chr1:50034842 Lac5g2113 Lac-Chr5:39768262 1.40E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23876 PF01167 Tub 1.90E-106 CL0395 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2113 K19600 - csv:101205595 758.444