Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2128 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGATGAAGCTGCCCTTTGCCGCTCTTGTGACGAGAAGGTTCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTAAGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGGTCCGTCTCCACACTCCAAGGTTCCCAATGATATTGGTAAAGGACATAATCAGCCACTGCCGCATAAAGTGACAGTTGAGGACAACCAGCAAAATCATCACCGACTATCTCCTGTTCGAGAGGCTAACGACGATGGTCATGCCGAGACTGATACGAAAATGATCGATTTGAATATGAAACCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCTATGA 561 45.45 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDGPSPHSKVPNDIGKGHNQPLPHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 39879952 39882083 - Lag0019212.1 Lac5g2128 608770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2128 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac5g2128 186 Gene3D Classic Zinc Finger 2 96 - -
Lac5g2128 186 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Lac5g2128 186 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Lac5g2128 186 MobiDBLite consensus disorder prediction 107 135 - -
Lac5g2128 186 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
Lac5g2128 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
Lac5g2128 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Lac5g2128 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lac5g2128 186 FunFam B-box zinc finger protein 19 2 92 - -
Lac5g2128 186 CDD Bbox1_BBX-like 56 96 IPR049808 -
Lac5g2128 186 CDD Bbox1_BBX-like 4 47 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2128 Lac-Chr5:39879952 Lac9g1749 Lac-Chr9:37162144 7.10E-53 dispersed
Lac5g2128 Lac-Chr5:39879952 Lac1g2983 Lac-Chr1:50557601 4.50E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23877 PF00643 zf-B_box 2.40E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2128 - - - 0.0