Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2149 ATGGTGAACAGCCAAGCTCCTTTGGTTGTTTCTGTTATGACATTTTATGTTTTGTTTTCAATGTTTGCTTACAAACCCATGGCAGAAGAAGCAGACCAAAACCGTAAGGTTCGCATCGTTTACCTTGGAGAAAGGCAATATGATGATATTAATTTAACAACTGAGTCTCACCATGATTTACTGGCCAAAGTATTGGGAAGCAAGGAAAAGTCATTGGAATCAATGGTGTACAGTTATAGACATGGCTTTTCTGGATTTGCAGCCAAGCTCACCAAGTCTCAAGCTCAACAGCTAGCCGAAATACCAGGGGTGATACGAGTTTTTCCAAGTTCACTTTACAAATTGCATACTACAAGAAGTTGGGATTTTCTCGGCCTCTCCTCTTCTTCCTCTGAGTCATCGAACCTTCTTCATCGTGCTAAAATGGGCGACAATGTCATCATAGGTGTCATTGATTCAGGATTCTGGCCGGAGTCGGCGTCTTTTGGAGACAAAGGATTGGGACCAATACCATCACGATGGAAAGGCAGATGCAAATCAGGAGAACTGTTCAATTCCACAAACTGCAACAGAAAAGTCATAGGAGCGCGCTGGTTCGTGAAGGGCTTCATCGCGGAGCATGGGCGGGAGGCACTAGCCAACGATTGGTTATCCGCACGAGACATCCATGGACACGGAACCCACACAGCCAGCACAGCTGCAGGTTCATTTGTAACAAATGTTAGCTACCATGGCCTTGGTGCCGGAACGCTGAGGGGCGGCGCGCCACTCGCACGGTTGGCCATATACAAGGTCGTGTGGTCCGGTGGTGGGTCGGAGGCGGACCTTTTGAAGGGCATAGATGTGGCCATTCACGACGGTGTGGATGTGCTATCTATATCGCTTGGGGGGCAAATTCCTTTGGTTCCAGAGTTCGACCAAGGAAATGGAATTGGCATTGGGTCATTTCATGCTATTGCGAGGGGGATTTCTGTTGTGTGTGCGGGTGGCAATGAAGGCCCTTATGAGCAGACGGTGTTAAACACTGCGCCTTGGATTTTAACTGTGGCTGCCACTACAATGGATAGAGCCTTTCCTTCATCAATTACTCTTGAAGATCATAATACCACTTATTTGGGCCAAAGCTTCTTCTATTCCAAAAAGGATCTTGTTGCTGAGTTGAGCCTCCCGCCAGATAGAAGATGTGATGACATTTCGGAAAATGAGAATTTTAGTGGGAAAGTTGTTCTCTGCTTCACTGATAAAGTTAATATGTCGGCGGCCACCGCGGTGATGAAAGCAAATGGGAGTGGGATAATTGTCGCCGGCGAAAGCATCGATATATTGATTGAGTTTGGCGAATCCTTTCCATTCGTCGTAGTGGATCCCGACGTTGGCACAAAATTGTTCTTTCAAGCTATAGACGACAGTAATCCAATGGTAAGGTTGAGGCATGCAAAAACCATCATCGGCAAGTCTATATCAACCAGGATTGCCCATTTCTCATCTAGAGGTCCAAATTCTGCTTCACCTGCAATTCTCAAGACAAGAATGGCACTTGCAAGGTATGATATTGAGAAGTTCGACGGGAAGGGGGATTTTGACTTGTGGAAAGCCAAGATTAAAGCAGTCTTAGGCCAACAAAAGGCTTTACATGCCTTGACAGACCCAACCAAGTTGCCCACGACAATGACAGAAGACGATAAAGAAAGCATGAACAGTCTAGCCTATGGAACAATAATTCTTAATTTAAGTAACAGTGTGTTAAGGCAGGTTATTGATGAAGATACTCCATTGAAGATCTGGACCAAGTTGAATATGCTTTATGAGACCAAAAGTGCACACAATAAAATGTATATGCGAGAGAAATTCTTCACCTTTAAGATGGATGCCGCGAAAACTCTAACAGAGAATCTTGACGAGTTTAAGAGGATGACCTCTGAGTTTAAGAATCTTGGAGAAAATATTGGTGATGAAAATGAGGCCTTTGTCCTCTTGAACTCTCTACCAGATTCCTATAAAGAAGTAAAGACAACACTTAAGTATGGCAGAAAGAATATCACCACAGATGCCATTGTTTCAGCCATCAGAACAAAAGAATTAGAGCTACTGTCTTTAAAGAAGGAAACAAACGAAGGATTGTTTGTAAAAGGAAAGAACAAAGGCAAAGAAGGGAAGAATCAGGCTGATGACAAGACTAAAACCAAGATCAAGTGCAATTATTGCCACAAAGAGGGTCATATCAAAAGAGACTGCTACTCTTTGAAAAGAAGGAATCAAGGCCAACGGTTTAAAAAGAACAAGCAGCCTGAAGCAGCAGTTGGTGAAAATTCCATAACATATTCAGATGCCCTTGCAACCTCAGATAAGAAGGATGAATCGACAAATCTCAGTGAAAAGCACGACTGGGTTATTGATTCAGGGTGTTCTTTCCATATGACACTCGCAAAAGGTTGGTTTAGCTCCTATCGAGAATGGGATGGAGGCATCGTTTACATGGGGAATAATCATACGTGCAGAGTGATGGGGATTGGTTCAGTCTCTTTGAAATTGAAGGATGGGTCAGTGAAGTTACTAAGGAACGTGAGGCATGTCCCAAACTTAAAACGAAACCTCATTTTCTTAGGAATGTTGGACTCAATCGGCTGCACGTATGGAGGGCATGGAGGTACAATTGAAATCAGGAAAGATTCTAAAGTTGTGCTTGTTGGAGAGAAAATAAATGGTCTTTATGTTGTGAAAGACGTGGACATGGTGCAAACAGCACTTGTGGTCACAAAAAACAGTCTAACTGAGAGTGATCTTTGGCACAAACGGCTGTCTCACATCAGTTCTAAAGGTCTACAAGTCCTAGCAAAGCAAAAAATTCTTCCTCAGGGGACTGGAGATGACCTTAGTTTCTGTGAACATTGCTTGGTTGGAAAAGCCAAAAGATAG 2916 43.52 MVNSQAPLVVSVMTFYVLFSMFAYKPMAEEADQNRKVRIVYLGERQYDDINLTTESHHDLLAKVLGSKEKSLESMVYSYRHGFSGFAAKLTKSQAQQLAEIPGVIRVFPSSLYKLHTTRSWDFLGLSSSSSESSNLLHRAKMGDNVIIGVIDSGFWPESASFGDKGLGPIPSRWKGRCKSGELFNSTNCNRKVIGARWFVKGFIAEHGREALANDWLSARDIHGHGTHTASTAAGSFVTNVSYHGLGAGTLRGGAPLARLAIYKVVWSGGGSEADLLKGIDVAIHDGVDVLSISLGGQIPLVPEFDQGNGIGIGSFHAIARGISVVCAGGNEGPYEQTVLNTAPWILTVAATTMDRAFPSSITLEDHNTTYLGQSFFYSKKDLVAELSLPPDRRCDDISENENFSGKVVLCFTDKVNMSAATAVMKANGSGIIVAGESIDILIEFGESFPFVVVDPDVGTKLFFQAIDDSNPMVRLRHAKTIIGKSISTRIAHFSSRGPNSASPAILKTRMALARYDIEKFDGKGDFDLWKAKIKAVLGQQKALHALTDPTKLPTTMTEDDKESMNSLAYGTIILNLSNSVLRQVIDEDTPLKIWTKLNMLYETKSAHNKMYMREKFFTFKMDAAKTLTENLDEFKRMTSEFKNLGENIGDENEAFVLLNSLPDSYKEVKTTLKYGRKNITTDAIVSAIRTKELELLSLKKETNEGLFVKGKNKGKEGKNQADDKTKTKIKCNYCHKEGHIKRDCYSLKRRNQGQRFKKNKQPEAAVGENSITYSDALATSDKKDESTNLSEKHDWVIDSGCSFHMTLAKGWFSSYREWDGGIVYMGNNHTCRVMGIGSVSLKLKDGSVKLLRNVRHVPNLKRNLIFLGMLDSIGCTYGGHGGTIEIRKDSKVVLVGEKINGLYVVKDVDMVQTALVVTKNSLTESDLWHKRLSHISSKGLQVLAKQKILPQGTGDDLSFCEHCLVGKAKR 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40033267 40040566 + Lag0019233.1 Lac5g2149 608791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2149 971 Gene3D - 355 483 - -
Lac5g2149 971 SMART c2hcfinal6 731 747 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g2149 971 Pfam GAG-pre-integrase domain 902 968 IPR025724 -
Lac5g2149 971 CDD Peptidases_S8_3 113 354 IPR034197 -
Lac5g2149 971 Gene3D - 708 760 - -
Lac5g2149 971 ProSiteProfiles Zinc finger CCHC-type profile. 731 745 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g2149 971 Pfam Subtilase family 143 501 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lac5g2149 971 SUPERFAMILY Subtilisin-like 12 504 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lac5g2149 971 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 39 508 IPR045051 -
Lac5g2149 971 SUPERFAMILY Retrovirus zinc finger-like domains 713 753 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Lac5g2149 971 CDD PA_subtilisin_like 361 476 - -
Lac5g2149 971 Pfam gag-polypeptide of LTR copia-type 566 690 - -
Lac5g2149 971 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 23 116 IPR037045 -
Lac5g2149 971 ProSiteProfiles Serine proteases, subtilase domain profile. 120 581 - -
Lac5g2149 971 Pfam Peptidase inhibitor I9 39 116 IPR010259 -
Lac5g2149 971 FunFam Subtilisin-like protease SBT5.3 27 116 - -
Lac5g2149 971 Pfam Pol polyprotein, beta-barrel domain 796 875 IPR054722 -
Lac5g2149 971 Gene3D Peptidase S8/S53 domain 145 510 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g0516 Lac-Chr1:12077999 Lac5g2149 Lac-Chr5:40033267 7.90E-63 dispersed
Lac2g2547 Lac-Chr2:38118134 Lac5g2149 Lac-Chr5:40033267 1.50E-93 dispersed
Lac2g2854 Lac-Chr2:44818314 Lac5g2149 Lac-Chr5:40033267 9.30E-55 dispersed
Lac3g1138 Lac-Chr3:9581542 Lac5g2149 Lac-Chr5:40033267 1.70E-109 dispersed
Lac5g2149 Lac-Chr5:40033267 Lac8g1793 Lac-Chr8:36135806 3.40E-215 dispersed
Lac9g2791 Lac-Chr9:46030222 Lac5g2149 Lac-Chr5:40033267 1.80E-70 dispersed
Lac5g2143 Lac-Chr5:39995883 Lac5g2149 Lac-Chr5:40033267 7.00E-68 proximal
Lac5g2144 Lac-Chr5:40002266 Lac5g2149 Lac-Chr5:40033267 1.20E-25 proximal
Lac5g2145 Lac-Chr5:40012457 Lac5g2149 Lac-Chr5:40033267 5.60E-10 proximal
Lac5g2149 Lac-Chr5:40033267 Lac5g2150 Lac-Chr5:40058986 5.10E-211 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2149 - - - 0.0