Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2156 ATGGATTTTGGCTCCTCTTCTGGATTTTCCCTCGAGAATCATCATCATCATCATCATCAGTACGACTTTCAGAGCAGCAGCAACAGCAACAACAACAACCCTGATTCAACTACAGATTTCGAGCAGCAGCAACAACAAATGGAATCAAGTTCAGTTTTTGTAGAGAAAGAGCACATGTTCGACAAGGTTGTGACTCCGAGCGATGTGGGAAAATTGAACCGGTTAGTGATCCCAAAGCAGCACGCGGAGAAGTACTTTCCACTGGATTCTTCATCGAACGAGAAGGGTCTTCTCCTAAACTTCGAAGACCGCAGTGGAAAATCATGGCGGTTTCGTTACTCTTACTGGACCAGCAGCCAGAGCTACGTGATGACCAAAGGCTGGAGCCGCTTCGTCAAGGAGAAAAGACTCGACGCCGGTGATATCGTCTCCTTTCAACGAGGGGTTGGAGACGTTGCTAAAGATCGCTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCCGCCGTCGAGACGGCTATCAATTTCCACCACCACGGCGGCGGAGCCTCCGCCGCCCAAATTCCTCACCATTTCCAGCTTCACCAGTGGAGTCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATGTCAGCCTATTTCATAATAATAACCCCTATCGGAATAATCCCTATAATCATCATCATTATCATCATCATCATCACAATCACCATCCCGTCGTCACCGCAACTGGTGACGGTGGCGGTGGTTTGTATGGTGGTTCATCGGTTTTTTACCATCTAAGATCCGCTGCGGAACCTTCTCACGAGGCAATGCCAGTTGCGACGAGTGGCGGTGGTGGCAGCGGCGGTGGAATTGGGAAAGGTGCTGCAGCTAAGACATTGAGGCTTTTTGGGGTCAACATGGAATGTGCGGTATCTGAGGAGTCCGAGGATGAGTGTGACATGACAACCTCGACGACGACAATGTCGCCCCAATTCCGCATTTACAACGGAATGCCAATGTCAATGCCGATGTCGATGTCGATGCAGATGTCGAACGCTAACAACGACCTACCGACCACGGACTTCTTCGAGAAAGGGAAGTCGTCTACGTCGTCGTTAGATTTTGGTACCTGA 1158 49.74 MDFGSSSGFSLENHHHHHHQYDFQSSSNSNNNNPDSTTDFEQQQQQMESSSVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRSGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGDVAKDRFFIDWRRRPPHAAVETAINFHHHGGGASAAQIPHHFQLHQWSPVATPLSLHRDHVLHLPQNNSNHNNVSLFHNNNPYRNNPYNHHHYHHHHHNHHPVVTATGDGGGGLYGGSSVFYHLRSAAEPSHEAMPVATSGGGGSGGGIGKGAAAKTLRLFGVNMECAVSEESEDECDMTTSTTTMSPQFRIYNGMPMSMPMSMSMQMSNANNDLPTTDFFEKGKSSTSSLDFGT 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40128244 40129401 + Lag0019240.1 Lac5g2156 608798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2156 385 ProSiteProfiles B3 DNA-binding domain profile. 60 165 IPR003340 GO:0003677(InterPro)
Lac5g2156 385 CDD B3_DNA 58 147 IPR003340 GO:0003677(InterPro)
Lac5g2156 385 MobiDBLite consensus disorder prediction 23 48 - -
Lac5g2156 385 MobiDBLite consensus disorder prediction 1 48 - -
Lac5g2156 385 SUPERFAMILY DNA-binding pseudobarrel domain 57 148 IPR015300 -
Lac5g2156 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 315 IPR044800 GO:0003700(InterPro)
Lac5g2156 385 FunFam B3 domain-containing protein 53 174 - -
Lac5g2156 385 Gene3D - 53 178 IPR015300 -
Lac5g2156 385 Pfam B3 DNA binding domain 60 164 IPR003340 GO:0003677(InterPro)
Lac5g2156 385 SMART B3_2 60 165 IPR003340 GO:0003677(InterPro)
Lac5g2156 385 MobiDBLite consensus disorder prediction 361 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1849 Lac-Chr11:33348978 Lac5g2156 Lac-Chr5:40128244 1.90E-57 dispersed
Lac3g1291 Lac-Chr3:11145011 Lac5g2156 Lac-Chr5:40128244 1.20E-24 dispersed
Lac5g2156 Lac-Chr5:40128244 Lac8g1280 Lac-Chr8:27917084 1.40E-34 dispersed
Lac5g2156 Lac-Chr5:40128244 Lac12g1184 Lac-Chr12:16011459 3.80E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23879 PF02362 B3 3.20E-29 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2156 K09287 - csv:101220139 397.127