Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2156 | ATGGATTTTGGCTCCTCTTCTGGATTTTCCCTCGAGAATCATCATCATCATCATCATCAGTACGACTTTCAGAGCAGCAGCAACAGCAACAACAACAACCCTGATTCAACTACAGATTTCGAGCAGCAGCAACAACAAATGGAATCAAGTTCAGTTTTTGTAGAGAAAGAGCACATGTTCGACAAGGTTGTGACTCCGAGCGATGTGGGAAAATTGAACCGGTTAGTGATCCCAAAGCAGCACGCGGAGAAGTACTTTCCACTGGATTCTTCATCGAACGAGAAGGGTCTTCTCCTAAACTTCGAAGACCGCAGTGGAAAATCATGGCGGTTTCGTTACTCTTACTGGACCAGCAGCCAGAGCTACGTGATGACCAAAGGCTGGAGCCGCTTCGTCAAGGAGAAAAGACTCGACGCCGGTGATATCGTCTCCTTTCAACGAGGGGTTGGAGACGTTGCTAAAGATCGCTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCCGCCGTCGAGACGGCTATCAATTTCCACCACCACGGCGGCGGAGCCTCCGCCGCCCAAATTCCTCACCATTTCCAGCTTCACCAGTGGAGTCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGTCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATGTCAGCCTATTTCATAATAATAACCCCTATCGGAATAATCCCTATAATCATCATCATTATCATCATCATCATCACAATCACCATCCCGTCGTCACCGCAACTGGTGACGGTGGCGGTGGTTTGTATGGTGGTTCATCGGTTTTTTACCATCTAAGATCCGCTGCGGAACCTTCTCACGAGGCAATGCCAGTTGCGACGAGTGGCGGTGGTGGCAGCGGCGGTGGAATTGGGAAAGGTGCTGCAGCTAAGACATTGAGGCTTTTTGGGGTCAACATGGAATGTGCGGTATCTGAGGAGTCCGAGGATGAGTGTGACATGACAACCTCGACGACGACAATGTCGCCCCAATTCCGCATTTACAACGGAATGCCAATGTCAATGCCGATGTCGATGTCGATGCAGATGTCGAACGCTAACAACGACCTACCGACCACGGACTTCTTCGAGAAAGGGAAGTCGTCTACGTCGTCGTTAGATTTTGGTACCTGA | 1158 | 49.74 | MDFGSSSGFSLENHHHHHHQYDFQSSSNSNNNNPDSTTDFEQQQQQMESSSVFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRSGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVGDVAKDRFFIDWRRRPPHAAVETAINFHHHGGGASAAQIPHHFQLHQWSPVATPLSLHRDHVLHLPQNNSNHNNVSLFHNNNPYRNNPYNHHHYHHHHHNHHPVVTATGDGGGGLYGGSSVFYHLRSAAEPSHEAMPVATSGGGGSGGGIGKGAAAKTLRLFGVNMECAVSEESEDECDMTTSTTTMSPQFRIYNGMPMSMPMSMSMQMSNANNDLPTTDFFEKGKSSTSSLDFGT | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40128244 | 40129401 | + | Lag0019240.1 | Lac5g2156 | 608798 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2156 | 385 | ProSiteProfiles | B3 DNA-binding domain profile. | 60 | 165 | IPR003340 | GO:0003677(InterPro) | |
Lac5g2156 | 385 | CDD | B3_DNA | 58 | 147 | IPR003340 | GO:0003677(InterPro) | |
Lac5g2156 | 385 | MobiDBLite | consensus disorder prediction | 23 | 48 | - | - | |
Lac5g2156 | 385 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Lac5g2156 | 385 | SUPERFAMILY | DNA-binding pseudobarrel domain | 57 | 148 | IPR015300 | - | |
Lac5g2156 | 385 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 17 | 315 | IPR044800 | GO:0003700(InterPro) | |
Lac5g2156 | 385 | FunFam | B3 domain-containing protein | 53 | 174 | - | - | |
Lac5g2156 | 385 | Gene3D | - | 53 | 178 | IPR015300 | - | |
Lac5g2156 | 385 | Pfam | B3 DNA binding domain | 60 | 164 | IPR003340 | GO:0003677(InterPro) | |
Lac5g2156 | 385 | SMART | B3_2 | 60 | 165 | IPR003340 | GO:0003677(InterPro) | |
Lac5g2156 | 385 | MobiDBLite | consensus disorder prediction | 361 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1849 | Lac-Chr11:33348978 | Lac5g2156 | Lac-Chr5:40128244 | 1.90E-57 | dispersed | |
Lac3g1291 | Lac-Chr3:11145011 | Lac5g2156 | Lac-Chr5:40128244 | 1.20E-24 | dispersed | |
Lac5g2156 | Lac-Chr5:40128244 | Lac8g1280 | Lac-Chr8:27917084 | 1.40E-34 | dispersed | |
Lac5g2156 | Lac-Chr5:40128244 | Lac12g1184 | Lac-Chr12:16011459 | 3.80E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23879 | PF02362 | B3 | 3.20E-29 | CL0405 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g2156 | K09287 | - | csv:101220139 | 397.127 |