Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2176 ATGGCAATTAGTTGCAGTAGTAGTAGTAGTAGTTCATTGATGATGATGATGAACTGCAGCACTGATCAGCTTAGTTGTGAAATTGATTGGGCTGGGCTTCTTTCTGGTTCTTGTTTGAGCTTGGAGATGGAGAAGAAGAAGGAAAGTGGAAGTGGGGTTGCAATGGAAACTCATGAGGATAATCATGGAGGGAAGAAGATCAGCAATAAAGGAAAAATGGTGATGGGATCAAAGACAAGTGCTGCAATGCCAAGGGTTGCTTTTCAGACAAGGAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAGTATGGTCAGAAGGCTGTCAAACATAGCACACATCCTAGGAGCTATTACCGATGTACACATCATACATGCAACGTTAAGAAACAAATTCAAAGGCACTCCAAGGATCCAACAATAGTGGTGACAACCTATGAAGGGATTCACAACCATCCATCTGAAAAATTAATGGAGACTCTAAGCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTGA 531 42.18 MAISCSSSSSSSLMMMMNCSTDQLSCEIDWAGLLSGSCLSLEMEKKKESGSGVAMETHEDNHGGKKISNKGKMVMGSKTSAAMPRVAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40334791 40336244 + Lag0019260.1 Lac5g2176 608818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2176 176 Pfam WRKY DNA -binding domain 98 155 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2176 176 Gene3D WRKY domain 81 156 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2176 176 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 56 155 IPR044810 GO:0003700(InterPro)
Lac5g2176 176 MobiDBLite consensus disorder prediction 49 67 - -
Lac5g2176 176 SUPERFAMILY WRKY DNA-binding domain 90 156 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2176 176 SMART WRKY_cls 97 156 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2176 176 FunFam WRKY transcription factor 57 83 157 - -
Lac5g2176 176 ProSiteProfiles WRKY domain profile. 92 157 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2176 176 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2176 Lac-Chr5:40334791 Lac7g1265 Lac-Chr7:11984076 2.00E-28 dispersed
Lac5g2175 Lac-Chr5:40326805 Lac5g2176 Lac-Chr5:40334791 2.10E-13 tandem
Lac5g2176 Lac-Chr5:40334791 Lac7g0198 Lac-Chr7:1561394 4.00E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23882 PF03106 WRKY 8.90E-25 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2176 - - - 0.0