Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2176 | ATGGCAATTAGTTGCAGTAGTAGTAGTAGTAGTTCATTGATGATGATGATGAACTGCAGCACTGATCAGCTTAGTTGTGAAATTGATTGGGCTGGGCTTCTTTCTGGTTCTTGTTTGAGCTTGGAGATGGAGAAGAAGAAGGAAAGTGGAAGTGGGGTTGCAATGGAAACTCATGAGGATAATCATGGAGGGAAGAAGATCAGCAATAAAGGAAAAATGGTGATGGGATCAAAGACAAGTGCTGCAATGCCAAGGGTTGCTTTTCAGACAAGGAGTGCTGAGGATGTTCTTGATGATGGCTATAGATGGAGGAAGTATGGTCAGAAGGCTGTCAAACATAGCACACATCCTAGGAGCTATTACCGATGTACACATCATACATGCAACGTTAAGAAACAAATTCAAAGGCACTCCAAGGATCCAACAATAGTGGTGACAACCTATGAAGGGATTCACAACCATCCATCTGAAAAATTAATGGAGACTCTAAGCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTGA | 531 | 42.18 | MAISCSSSSSSSLMMMMNCSTDQLSCEIDWAGLLSGSCLSLEMEKKKESGSGVAMETHEDNHGGKKISNKGKMVMGSKTSAAMPRVAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 40334791 | 40336244 | + | Lag0019260.1 | Lac5g2176 | 608818 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2176 | 176 | Pfam | WRKY DNA -binding domain | 98 | 155 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2176 | 176 | Gene3D | WRKY domain | 81 | 156 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2176 | 176 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 56 | 155 | IPR044810 | GO:0003700(InterPro) | |
Lac5g2176 | 176 | MobiDBLite | consensus disorder prediction | 49 | 67 | - | - | |
Lac5g2176 | 176 | SUPERFAMILY | WRKY DNA-binding domain | 90 | 156 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2176 | 176 | SMART | WRKY_cls | 97 | 156 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2176 | 176 | FunFam | WRKY transcription factor 57 | 83 | 157 | - | - | |
Lac5g2176 | 176 | ProSiteProfiles | WRKY domain profile. | 92 | 157 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac5g2176 | 176 | MobiDBLite | consensus disorder prediction | 49 | 71 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2176 | Lac-Chr5:40334791 | Lac7g1265 | Lac-Chr7:11984076 | 2.00E-28 | dispersed | |
Lac5g2175 | Lac-Chr5:40326805 | Lac5g2176 | Lac-Chr5:40334791 | 2.10E-13 | tandem | |
Lac5g2176 | Lac-Chr5:40334791 | Lac7g0198 | Lac-Chr7:1561394 | 4.00E-13 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23882 | PF03106 | WRKY | 8.90E-25 | CL0274 | Lac | TF |
Pathway information
