Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2193 ATGATCGACGGTGGTTGTTGTTGGTCAGATATGGCGGCGGCGAATGCGACGGCGGCCGGAAGCTGTCCGGCGGCGATGAAAGCGACGTCGAACGGAGTGTTTCAGGGCGACAACCCGCTGGATTTCGCTCTTCCTTTGGCGATTCTTCAGATATGTTTGGTCGTCGTTCTCACTCGTGTTCTTGGTTTGCTTCTCCGACCACTCAGACAGCCTCGAGTCATTGCTGAGATTGTCGGGGGAATATTGCTTGGGCCATCAGCGGTGGGTCGGAGCCAGGAATTTCTGCACACAATATTCCCAGCAAGAAGCCTTACAGTTTTGGACACATTGGCGAATCTGGGTCTTCTCTTCTTCTTATTTCTAGTGGGCCTTGAGCTAGATCCGAAATCCCTCCGCCAGACCGGCAAGGGCGCCATGGGCATAGCCCTCGCCGGAATCACTCTCCCGTTCGTCCTCGGCATCGGCACCTCCTACGTCCTCCGCTCCACCATCTCCAAAGGCGTCCACGGCCCTCCCTTCCTCGTCTTCATGGGTGTCGCTCTCTCCATCACCGCCTTCCCTGTTCTTGCCCGTATCCTCGCCGAGCTCAAGCTCTTGACCACCAACGTCGGCCGCATGGCCATGTCCGCCGCCGCCGTCAACGACGTCGCCGCCTGGATCCTCCTCGCCCTCGCCATCGCCCTCTCCGGCACCGGCCGTTCCCCTCTCGTCTCCCTTTGGGTCTTCCTCTGCGGCTCTGCTTTTGTCCTCTCCTGCTTCTTCACTCTGCCACCGCTCTTCCGCTGGATGTCCCGCCGTTGCTCCGAGGGCGAGCCCGTCAGCGAACTCTACATCTGCGCCACTCTCTCCATCGTCCTCGCCGCCGGGTTCTTCACCGATTTAATCGGAATCCACGCCCTGTTCGGCGCTTTCATCGTCGGCGTCCTCGTCCCTAAGGACGGCCCACTCGCCGGAGCCCTCGTCGAGAAAGTCGAAGACCTCGTCTCCGGCTTATTCCTTCCTCTGTATTTCGTTTCGAGCGGATTGAAAACCAACATTGCCACAATCAAAGGAGCCCAGTCGTGGGGTCTCCTCGTTCTCGTCGTCGTCACCGCCTGTTTCGGGAAAATCGTCGGCACCATCGCCGTCGCACTCCTCTGCAAGATGCCATTCCAAGAATCCCTCGCTCTGGGATTCCTGATGAACACCAAAGGCCTCGTCGAACTGATCGTCCTCAACATCGGGAAAGACAGAAAGGTCTTGAACGATCAGACCTTTGCGATTCTCGTTCTAATGGCGATCATCACGACCTTCATCACCACGCCGGTCGTGATGGCGGTCTACAAGCCGGCGAAGAGAAAGAGCAAATCTGAATACACGTACAGGACGATCGAGCGAGACGACCCCAGTTCCGAGCTGCGGATTTTGGCTTGTTTTCACTCGGTTAACAACATCCCTTCGATTTTGAATCTGATTGAGGTGTCCCGTGGGACGGAAGGCCGCAGTCGCCGGCTCTGTGTGTATGCGATGCATTTGATGGAGCTGACGGAGAGGTCGTCGGCGATTGCTATGGTCCACCGAGCCAGAAAGAATGGGCTGCCGTTTTGGAATAAAGGAGGGAGGTCGGATTCCGATCAAATTGTCGTTGCTTTTGAAGCTTTCCGGCAGCTTAGTCGGGTGTCTGTACGGCCGATGACGGCTATATCGGCGTTGTCTGAAATGCATGAAGATGTCTGCAACAGTGCAGAGAGGAAACGGGCGGCCATTATCATCCTCCCATTCCACAAACACCAAAGGTTTGATGGATGTTTAGAGACAACACGAGCAGATTTCCAATGGGTCAATCAAAAAGTTCTGGAACAACCACCTTGCTCCGTCGGGATCTTGGTCGATCGAGGATTCGGAGGTGGGTCTCACATTTGTGCTAGCAACGTCTCTTCCACCATAACCGTCTTCTTCTTCGGTGGTCGCGACGATCGCGAAGCTCTAGCCTACGGTCGAAGAATGGCAGAGCATCCTGGAATAGCCCTAAACGTCATTCGTTTCCTTGTGAGCCCCAATGTGGCCGTCGAATCCATTGCGATCGACATGAACAAAGACGATAGTAAGAATTCAACGGCCATGGATGAGAGGGCGTTGACGGAGTTCAACACGAAGAAAACAGACGACGAGTCGGTCAAGTACGAAGAGAGGGTCGTGAACAAATTTAGCGACGCCATTGAAGTAATAAGGGAGTTCAGTAGATGCAATTTGATATTGGTGGGTCAAGCGCCGGAGGGGAAAGTAATGGACAGTTTTCATTTGAAGACTGTTGAATGTTCTTCGGACTTGGGTCCAATCGGCAGCTTGTTGACATCGTCGGAGCTCTCGACGTCGGCTTCAGTGTTGGTCGTGCAACAGTTTCGTGGTCCGTCCTTGTCTTCTTCCTCCACATCCACAGCCATGGTATTGCCAGAAGAAGTTAAGTGA 2448 54.74 MIDGGCCWSDMAAANATAAGSCPAAMKATSNGVFQGDNPLDFALPLAILQICLVVVLTRVLGLLLRPLRQPRVIAEIVGGILLGPSAVGRSQEFLHTIFPARSLTVLDTLANLGLLFFLFLVGLELDPKSLRQTGKGAMGIALAGITLPFVLGIGTSYVLRSTISKGVHGPPFLVFMGVALSITAFPVLARILAELKLLTTNVGRMAMSAAAVNDVAAWILLALAIALSGTGRSPLVSLWVFLCGSAFVLSCFFTLPPLFRWMSRRCSEGEPVSELYICATLSIVLAAGFFTDLIGIHALFGAFIVGVLVPKDGPLAGALVEKVEDLVSGLFLPLYFVSSGLKTNIATIKGAQSWGLLVLVVVTACFGKIVGTIAVALLCKMPFQESLALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAIITTFITTPVVMAVYKPAKRKSKSEYTYRTIERDDPSSELRILACFHSVNNIPSILNLIEVSRGTEGRSRRLCVYAMHLMELTERSSAIAMVHRARKNGLPFWNKGGRSDSDQIVVAFEAFRQLSRVSVRPMTAISALSEMHEDVCNSAERKRAAIIILPFHKHQRFDGCLETTRADFQWVNQKVLEQPPCSVGILVDRGFGGGSHICASNVSSTITVFFFGGRDDREALAYGRRMAEHPGIALNVIRFLVSPNVAVESIAIDMNKDDSKNSTAMDERALTEFNTKKTDDESVKYEERVVNKFSDAIEVIREFSRCNLILVGQAPEGKVMDSFHLKTVECSSDLGPIGSLLTSSELSTSASVLVVQQFRGPSLSSSSTSTAMVLPEEVK 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40534211 40538796 - Lag0019277.1 Lac5g2193 608835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2193 815 Gene3D - 46 451 IPR038770 -
Lac5g2193 815 PANTHER CATION/H + ANTIPORTER 22 795 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lac5g2193 815 FunFam Cation/H(+) antiporter 15 46 448 - -
Lac5g2193 815 Pfam Sodium/hydrogen exchanger family 57 436 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1376 Lac-Chr3:12218078 Lac5g2193 Lac-Chr5:40534211 9.30E-07 dispersed
Lac5g2191 Lac-Chr5:40501841 Lac5g2193 Lac-Chr5:40534211 3.00E-302 dispersed
Lac5g2193 Lac-Chr5:40534211 Lac9g0210 Lac-Chr9:3239579 8.10E-202 dispersed
Lac5g2192 Lac-Chr5:40523238 Lac5g2193 Lac-Chr5:40534211 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2193 K26731 - csv:101203169 1303.89