Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2249 | ATGGCTAATCGGGGAGGGGGGTCGTTTTCACCCTCAAATGTTTCGCCTCAAGGTTGGGGAGGAGATGAGCTTTACACTGAGCTATGGAAGGCCTCGGCTGGGCCGCTTGTGGAAGTTCCTCGAGTTCATGAGAAGGTTTTCTATTTTCCTCAGGGTCATATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTGAATCAGAAACTTCCTTCGTTTAATCTTTCCTCCAAAATTCTTTGTCATGTTGTTGATGTCCGGCTGCTGGCAGAGCAGGAAACAGATGAGGTTTATGCACAGATAGCTTTAATGCCAGAATCAAATCAAGAGGAACCTCCAAGTGCTGATCCTTCACCTCCGGAGATTCGAAAAGCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTTCGTAAGCATGCCACTGAATGCTTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTTGTAGCCAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATTTTTAGGGGTCAACCGCGAAGGCATTTGCTAACGACCGGTTGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGAGAGTTGCGAGTTGGAGTGAGACGTCTTGCTCGCCAACAAAGCAGCATGCCCTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCATCAGCTTGAATAAGTACATGGAAGCAATGAACAGTAAGTTCTTGGTGGGGATGAGGTTCAAGATGAGGTTTGAAGGAGAGGAGTCTCCAGAGAGAAGGTTCTCGGGCACGATAGTTGGAGTTGACGACATATCTCCTCACTGGCCTAATTCGAAATGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTGTTCATAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCGAGCATTCCACAATCAGTTTCCGTAAAAAATAAAAGGCCTCGACCTCCACTTGATATTCCAGATTCTGATAATTCAACTGTAACAACTCTACGACATCCGGGATCAACTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGACATTAAAAGATTTGAAAATCATGCAACTTGGCATTACAAGCAAACGGATGCTAGCAGCAATGGGAATTCCGTATCAAGGACACTGAACGAGGGTTCTTGGTTAACTTCCCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGATTTGACAGAGGACCGTAAAAGTAATTCTGTTTGGTCGACGGTCTTCCCAGGAGCGCCAACAGCACACTCGACATGTCCGACTCCACGCACGCCAAATCTGAAGAGTGACCAAATACATGATCTTGGGGAAAGGGGGAGGAAAACTGAGGTGGCTCCGAGCTGTCGCTTGTTTGGGATCGAGCTCATTAATCATTCTAAGAGCCCAGTTCCACCTGAAAGGGCAGCAGATCAACTGATTGGCGCGCCAAATGGAAGTACTGAAAGCCAGGTCAATACCTTGCTATCATCTAATGCAGAGCAGAACTCAGACCTGCCAAAGGCTTCAAAAGAAAGAAAATTAGGACTTTTACAAGCCCCTCCTAAAGAGATTCAGCACAAACAGAACGGCTCGACCAACAGCCGAAGCCGTACCAAGGTTCAAATGCAAGGGATGGCTGTTGGACGTGCGGTGGACCTTACAACGTTGGATGGGTATGGCCAACTCATTGATGAACTCGAAAAGATGTTCGATATCAAGGGAGAACTTCGCCCTCGTGATAAGTGGGAGATTGTCTTCACTGATGATGAAGGAGATACAATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCAAGTCAAGATGTGAAGATGAGTTCGGGTAGCAAGCTTACGATGTCTACAATCGAATGTGATGGGACGGTAATAACCTCGGAGTCGGCCGATAGCTGA | 2124 | 46.94 | MANRGGGSFSPSNVSPQGWGGDELYTELWKASAGPLVEVPRVHEKVFYFPQGHMEQLEASTNQELNQKLPSFNLSSKILCHVVDVRLLAEQETDEVYAQIALMPESNQEEPPSADPSPPEIRKAKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIISLNKYMEAMNSKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISPHWPNSKWRSLRIQWDELASVHRPDRVSPWEIEPFVAPTSPSIPQSVSVKNKRPRPPLDIPDSDNSTVTTLRHPGSTQSHDDRTQLSVAAADIKRFENHATWHYKQTDASSNGNSVSRTLNEGSWLTSPNGSVSQHRLQDLTEDRKSNSVWSTVFPGAPTAHSTCPTPRTPNLKSDQIHDLGERGRKTEVAPSCRLFGIELINHSKSPVPPERAADQLIGAPNGSTESQVNTLLSSNAEQNSDLPKASKERKLGLLQAPPKEIQHKQNGSTNSRSRTKVQMQGMAVGRAVDLTTLDGYGQLIDELEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLTMSTIECDGTVITSESADS | 707 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 41182364 | 41185999 | + | Lag0019333.1 | Lac5g2249 | 608891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2249 | 707 | MobiDBLite | consensus disorder prediction | 479 | 496 | - | - | |
Lac5g2249 | 707 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 23 | 683 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lac5g2249 | 707 | CDD | B3_DNA | 127 | 229 | IPR003340 | GO:0003677(InterPro) | |
Lac5g2249 | 707 | ProSiteProfiles | PB1 domain profile. | 596 | 677 | IPR053793 | - | |
Lac5g2249 | 707 | MobiDBLite | consensus disorder prediction | 585 | 600 | - | - | |
Lac5g2249 | 707 | SUPERFAMILY | CAD & PB1 domains | 594 | 672 | - | - | |
Lac5g2249 | 707 | MobiDBLite | consensus disorder prediction | 384 | 405 | - | - | |
Lac5g2249 | 707 | MobiDBLite | consensus disorder prediction | 579 | 600 | - | - | |
Lac5g2249 | 707 | FunFam | Auxin response factor | 290 | 361 | - | - | |
Lac5g2249 | 707 | Pfam | AUX/IAA family | 643 | 679 | IPR033389 | - | |
Lac5g2249 | 707 | Pfam | AUX/IAA family | 584 | 632 | IPR033389 | - | |
Lac5g2249 | 707 | SUPERFAMILY | DNA-binding pseudobarrel domain | 120 | 258 | IPR015300 | - | |
Lac5g2249 | 707 | MobiDBLite | consensus disorder prediction | 362 | 405 | - | - | |
Lac5g2249 | 707 | FunFam | Auxin response factor | 127 | 231 | - | - | |
Lac5g2249 | 707 | Gene3D | - | 290 | 361 | - | - | |
Lac5g2249 | 707 | ProSiteProfiles | B3 DNA-binding domain profile. | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Lac5g2249 | 707 | Gene3D | - | 591 | 683 | - | - | |
Lac5g2249 | 707 | SMART | B3_2 | 129 | 231 | IPR003340 | GO:0003677(InterPro) | |
Lac5g2249 | 707 | MobiDBLite | consensus disorder prediction | 479 | 499 | - | - | |
Lac5g2249 | 707 | Gene3D | - | 126 | 230 | IPR015300 | - | |
Lac5g2249 | 707 | Pfam | Auxin response factor | 255 | 333 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lac5g2249 | 707 | Pfam | B3 DNA binding domain | 129 | 229 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g2278 | Lac-Chr13:35947543 | Lac5g2249 | Lac-Chr5:41182364 | 1.30E-176 | dispersed | |
Lac5g2249 | Lac-Chr5:41182364 | Lac6g3115 | Lac-Chr6:48549666 | 6.20E-97 | dispersed | |
Lac12g0970 | Lac-Chr12:10923180 | Lac5g2249 | Lac-Chr5:41182364 | 1.60E-206 | transposed | |
Lac3g0024 | Lac-Chr3:237205 | Lac5g2249 | Lac-Chr5:41182364 | 2.70E-152 | transposed | |
Lac8g0669 | Lac-Chr8:11944645 | Lac5g2249 | Lac-Chr5:41182364 | 1.90E-18 | transposed | |
Lac9g2568 | Lac-Chr9:44277163 | Lac5g2249 | Lac-Chr5:41182364 | 1.30E-91 | transposed | |
Lac11g1970 | Lac-Chr11:35217293 | Lac5g2249 | Lac-Chr5:41182364 | 5.80E-241 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23888 | PF02309 | AUX_IAA | 1.20E-11 | CL0072 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g2249 | K14486 | - | csv:101213942 | 1208.36 |