Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2249 ATGGCTAATCGGGGAGGGGGGTCGTTTTCACCCTCAAATGTTTCGCCTCAAGGTTGGGGAGGAGATGAGCTTTACACTGAGCTATGGAAGGCCTCGGCTGGGCCGCTTGTGGAAGTTCCTCGAGTTCATGAGAAGGTTTTCTATTTTCCTCAGGGTCATATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTGAATCAGAAACTTCCTTCGTTTAATCTTTCCTCCAAAATTCTTTGTCATGTTGTTGATGTCCGGCTGCTGGCAGAGCAGGAAACAGATGAGGTTTATGCACAGATAGCTTTAATGCCAGAATCAAATCAAGAGGAACCTCCAAGTGCTGATCCTTCACCTCCGGAGATTCGAAAAGCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTTCGTAAGCATGCCACTGAATGCTTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTTGTAGCCAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATTTTTAGGGGTCAACCGCGAAGGCATTTGCTAACGACCGGTTGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGAGAGTTGCGAGTTGGAGTGAGACGTCTTGCTCGCCAACAAAGCAGCATGCCCTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCATCAGCTTGAATAAGTACATGGAAGCAATGAACAGTAAGTTCTTGGTGGGGATGAGGTTCAAGATGAGGTTTGAAGGAGAGGAGTCTCCAGAGAGAAGGTTCTCGGGCACGATAGTTGGAGTTGACGACATATCTCCTCACTGGCCTAATTCGAAATGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTGTTCATAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCGAGCATTCCACAATCAGTTTCCGTAAAAAATAAAAGGCCTCGACCTCCACTTGATATTCCAGATTCTGATAATTCAACTGTAACAACTCTACGACATCCGGGATCAACTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGACATTAAAAGATTTGAAAATCATGCAACTTGGCATTACAAGCAAACGGATGCTAGCAGCAATGGGAATTCCGTATCAAGGACACTGAACGAGGGTTCTTGGTTAACTTCCCCGAATGGGAGTGTTTCTCAGCATCGGTTACAGGATTTGACAGAGGACCGTAAAAGTAATTCTGTTTGGTCGACGGTCTTCCCAGGAGCGCCAACAGCACACTCGACATGTCCGACTCCACGCACGCCAAATCTGAAGAGTGACCAAATACATGATCTTGGGGAAAGGGGGAGGAAAACTGAGGTGGCTCCGAGCTGTCGCTTGTTTGGGATCGAGCTCATTAATCATTCTAAGAGCCCAGTTCCACCTGAAAGGGCAGCAGATCAACTGATTGGCGCGCCAAATGGAAGTACTGAAAGCCAGGTCAATACCTTGCTATCATCTAATGCAGAGCAGAACTCAGACCTGCCAAAGGCTTCAAAAGAAAGAAAATTAGGACTTTTACAAGCCCCTCCTAAAGAGATTCAGCACAAACAGAACGGCTCGACCAACAGCCGAAGCCGTACCAAGGTTCAAATGCAAGGGATGGCTGTTGGACGTGCGGTGGACCTTACAACGTTGGATGGGTATGGCCAACTCATTGATGAACTCGAAAAGATGTTCGATATCAAGGGAGAACTTCGCCCTCGTGATAAGTGGGAGATTGTCTTCACTGATGATGAAGGAGATACAATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCAAGTCAAGATGTGAAGATGAGTTCGGGTAGCAAGCTTACGATGTCTACAATCGAATGTGATGGGACGGTAATAACCTCGGAGTCGGCCGATAGCTGA 2124 46.94 MANRGGGSFSPSNVSPQGWGGDELYTELWKASAGPLVEVPRVHEKVFYFPQGHMEQLEASTNQELNQKLPSFNLSSKILCHVVDVRLLAEQETDEVYAQIALMPESNQEEPPSADPSPPEIRKAKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIISLNKYMEAMNSKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISPHWPNSKWRSLRIQWDELASVHRPDRVSPWEIEPFVAPTSPSIPQSVSVKNKRPRPPLDIPDSDNSTVTTLRHPGSTQSHDDRTQLSVAAADIKRFENHATWHYKQTDASSNGNSVSRTLNEGSWLTSPNGSVSQHRLQDLTEDRKSNSVWSTVFPGAPTAHSTCPTPRTPNLKSDQIHDLGERGRKTEVAPSCRLFGIELINHSKSPVPPERAADQLIGAPNGSTESQVNTLLSSNAEQNSDLPKASKERKLGLLQAPPKEIQHKQNGSTNSRSRTKVQMQGMAVGRAVDLTTLDGYGQLIDELEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLTMSTIECDGTVITSESADS 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41182364 41185999 + Lag0019333.1 Lac5g2249 608891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2249 707 MobiDBLite consensus disorder prediction 479 496 - -
Lac5g2249 707 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 683 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac5g2249 707 CDD B3_DNA 127 229 IPR003340 GO:0003677(InterPro)
Lac5g2249 707 ProSiteProfiles PB1 domain profile. 596 677 IPR053793 -
Lac5g2249 707 MobiDBLite consensus disorder prediction 585 600 - -
Lac5g2249 707 SUPERFAMILY CAD & PB1 domains 594 672 - -
Lac5g2249 707 MobiDBLite consensus disorder prediction 384 405 - -
Lac5g2249 707 MobiDBLite consensus disorder prediction 579 600 - -
Lac5g2249 707 FunFam Auxin response factor 290 361 - -
Lac5g2249 707 Pfam AUX/IAA family 643 679 IPR033389 -
Lac5g2249 707 Pfam AUX/IAA family 584 632 IPR033389 -
Lac5g2249 707 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Lac5g2249 707 MobiDBLite consensus disorder prediction 362 405 - -
Lac5g2249 707 FunFam Auxin response factor 127 231 - -
Lac5g2249 707 Gene3D - 290 361 - -
Lac5g2249 707 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
Lac5g2249 707 Gene3D - 591 683 - -
Lac5g2249 707 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
Lac5g2249 707 MobiDBLite consensus disorder prediction 479 499 - -
Lac5g2249 707 Gene3D - 126 230 IPR015300 -
Lac5g2249 707 Pfam Auxin response factor 255 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac5g2249 707 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g2278 Lac-Chr13:35947543 Lac5g2249 Lac-Chr5:41182364 1.30E-176 dispersed
Lac5g2249 Lac-Chr5:41182364 Lac6g3115 Lac-Chr6:48549666 6.20E-97 dispersed
Lac12g0970 Lac-Chr12:10923180 Lac5g2249 Lac-Chr5:41182364 1.60E-206 transposed
Lac3g0024 Lac-Chr3:237205 Lac5g2249 Lac-Chr5:41182364 2.70E-152 transposed
Lac8g0669 Lac-Chr8:11944645 Lac5g2249 Lac-Chr5:41182364 1.90E-18 transposed
Lac9g2568 Lac-Chr9:44277163 Lac5g2249 Lac-Chr5:41182364 1.30E-91 transposed
Lac11g1970 Lac-Chr11:35217293 Lac5g2249 Lac-Chr5:41182364 5.80E-241 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23888 PF02309 AUX_IAA 1.20E-11 CL0072 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2249 K14486 - csv:101213942 1208.36