Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2261 ATGAACGAGCCTGATTCCGACCACCCATCTCCCTTTTTCCCCAAATCCACCCATCGTTCCAGCGCCGACGACCGAACCCCACTCATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCGTTTGCTTCCAACCCCATGTCCCCTTTTCTGGTTTCCACCTCCGATCATCTTGGTTCCCCTCTTTGGGCCTTCTCTGAGGCCGATGATGACGACGATTCCAAGTTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTCGAATTCTGTACCGCAAAAGCCGACCGAGAACCACAAGGTTAAGATTCTTCCAGTTCCATCTTCAACATGGGGACTAATGCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCCCTTCGGTACATTAAAGAATCGTCTGACCAGCATGTACTAGCTCAGGTTTGGGCGCCTGTAAGAAGTGGTGGCAAGTTTGTACTTTCAACTTCCGGGCAACCGTTTGTCCTTGATACACAGAGCAACGGACTTCATCAGTATAGGATGGTCTCTTTGACGTATATGTTCTCTTTGGACCCCGATCCGAATGAAAATCTCGGGCTCCCTGGTCGTGTTTTCCAACAAAAATTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTATCCACGACTTAGTCACGCTCTTCACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCAGGGCAGTCTTGTCTTGGTGTTCTCGAGCTAATCATGACTGCACCAAAGATCAATTATGCACCTGAGGTCGACAAAATCTGCAAAGCTCTTCAGGCTGTCAATCTAAAAAGTTCAGAGATTTTGGATCATCCGATTACCCAGATTTGCAATGAAGGTCGACAGCATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAACGTGCTCGCCTACGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCCGCAACTGAAGTAGCATCCTATGTTGTTGATGCTCACATGTGGGGTTTTCGTGAGGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAGAGCGTTTTCATCCCACAGCTCATGTTTTTGTGGAGATATCACCCAATTCTGCAAGACCGAGTACCCTTTGGTACACTATGCACTCATGTTCGGATTAAAGAGCTGTTTTTCGATCTGCTTACGGAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATTGTTGATTATCAGGAACAAAAGTCTTTGTTGGGTGTGTTAATGGCAACAATGAAGCAGCACTTCTACACTCTCAAAGTTGCTTCTGGAATCAACCTCGAGGAGGAGGAAGGACTCATCGAGATCATTCAAGCATCAAGAAATGGGGGGTTTGAGTCTATATTTGAATACATTCAAATTCCCCGACCCATGGAGTTACCACCGAAGTCTGATGCCATGCCAAAAGCAAGAGAGGTAGTTGCATTAGAAACATTGCAACAGCAATCTTTAATGGTTCATGATGCCCCGAAGGACGAAACCAATACCACTCGTGATGGGGAAAGCCAGAGCCCTGTTCCTTGTCCACAGAAGAAAGAAGTAAAAAAGACATCCGAAAGGAAGCGTGGGAAAGCCGAAAAATCAATTAGTCTGGAGGTTCTACAACAATACTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACATGGAATCTCACGTTGGCCATCTCGGAAGATCAACAAGGTGAATCGCTCTCTTTCAAAGCTAAAGCGCGTGATCGAATCTGTTCAAGGGGCCGAAGGAGCATTCGGAATATCTTCTCTGTCTACAAGTCCACTTCCTGTTGCTGTTAGTTCGAGTTCTCATCCTTTAACTCCGGACGGGTCTAACCAGCAAAACTTTGTTGCTTCTCAACCCTCTGATCCCCAACATAAAGAAACAAACACCTCAGAAGCACAGACAAATGACACACGGTCTAGACAAGAAGATTTACATAGGGAAGTGTTGAGTCCAGAAGAACCGATTCACGAGCAGAACGGATTTCTGCCGAAGTTCGGAAATGGTTTGAACAATTTTAAAACAGGGAGTGGATCACGGGAAGAGAGCACTGGGACTCCTACTTCTCATGGTTCTTGCCAAGGTAGTCCTGCAAACGACAGTGCGGCAGCAAATAATCCCAATTCTATTCCCCACCAAGAACAAATTGTCAGAAGAGAATCTCCCGAAGCAGCATTCCATCCAATGGATAAACTGAATATATCTGCTCCTGCTTGTCCAATCCCGGATACGCTCGTGATGGTCGAACCCGAGGAACCATTTGGAGGAATGCTGATTGAGGATGCAGGAAGTTCTAAAGACTTAAAAAATCTTTGCGCTTCTGTCGCTGATGCTGTTCTCGACGAGCAAGTACCCGAATTTTGTTGGACCAACCCTCCTGATATAGCTCTGAGACAACCTATGGACTCTATTTGTCACACAGTCCCTCCTCATATATCAGTAAGGCAAGAACCAAGGAGAATGACTATCAAGGCCACTTATAAGGAAGATATCATTCGGTTTCGAATTTCCTCGAGTTCTGGGATTGTGGAGTTAAGAGAAGAAGTGGCAAAGAGATTGAAATTGGAGGTTGGTACGTTCGACATCAAATACATGGACGACGATCGTGAATGGGTTCTTATTGCCTGCGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAATCATCAGGTAGCAACATAATAAGATTGTTGGTTCATGATTTATCTGTCATTCTTGGGAGTTCTTGTGAGAGTACCGGGGAGTGA 2979 45.59 MNEPDSDHPSPFFPKSTHRSSADDRTPLMDFDLDLDIPWPLDQIPSFASNPMSPFLVSTSDHLGSPLWAFSEADDDDDSKFAAYACSVLGTSNSNSVPQKPTENHKVKILPVPSSTWGLMPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVRSGGKFVLSTSGQPFVLDTQSNGLHQYRMVSLTYMFSLDPDPNENLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFDPSGQSCLGVLELIMTAPKINYAPEVDKICKALQAVNLKSSEILDHPITQICNEGRQHALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKSLLGVLMATMKQHFYTLKVASGINLEEEEGLIEIIQASRNGGFESIFEYIQIPRPMELPPKSDAMPKAREVVALETLQQQSLMVHDAPKDETNTTRDGESQSPVPCPQKKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLSTSPLPVAVSSSSHPLTPDGSNQQNFVASQPSDPQHKETNTSEAQTNDTRSRQEDLHREVLSPEEPIHEQNGFLPKFGNGLNNFKTGSGSREESTGTPTSHGSCQGSPANDSAAANNPNSIPHQEQIVRRESPEAAFHPMDKLNISAPACPIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWTNPPDIALRQPMDSICHTVPPHISVRQEPRRMTIKATYKEDIIRFRISSSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLLVHDLSVILGSSCESTGE 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41318544 41322514 + Lag0019345.1 Lac5g2261 608903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2261 992 SMART PB1_new 897 979 IPR000270 GO:0005515(InterPro)
Lac5g2261 992 PANTHER PROTEIN NLP8 65 991 IPR045012 GO:0003700(InterPro)
Lac5g2261 992 MobiDBLite consensus disorder prediction 672 785 - -
Lac5g2261 992 MobiDBLite consensus disorder prediction 548 590 - -
Lac5g2261 992 Pfam RWP-RK domain 592 639 IPR003035 -
Lac5g2261 992 Pfam PB1 domain 898 978 IPR000270 GO:0005515(InterPro)
Lac5g2261 992 CDD PB1_NLP 898 978 IPR034891 -
Lac5g2261 992 MobiDBLite consensus disorder prediction 714 731 - -
Lac5g2261 992 ProSiteProfiles PB1 domain profile. 897 979 IPR053793 -
Lac5g2261 992 ProSiteProfiles RWP-RK domain profile. 579 660 IPR003035 -
Lac5g2261 992 MobiDBLite consensus disorder prediction 576 590 - -
Lac5g2261 992 MobiDBLite consensus disorder prediction 1 27 - -
Lac5g2261 992 SUPERFAMILY CAD & PB1 domains 890 980 - -
Lac5g2261 992 MobiDBLite consensus disorder prediction 672 713 - -
Lac5g2261 992 Gene3D - 895 978 - -
Lac5g2261 992 MobiDBLite consensus disorder prediction 747 785 - -
Lac5g2261 992 FunFam RWP-RK domain-containing protein 894 978 - -
Lac5g2261 992 Pfam NLP protein GAF domain 300 483 IPR055081 -
Lac5g2261 992 Pfam NLP protein GAF domain 149 285 IPR055081 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2261 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0083 Lac-Chr2:601883 Lac5g2261 Lac-Chr5:41318544 4.90E-124 dispersed
Lac5g2261 Lac-Chr5:41318544 Lac7g1400 Lac-Chr7:13828323 1.10E-123 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g2261 . 186 992 NLP Transcription Factor Family AT1G64530 51.4 5.4e-215 745.0
Lac5g2261 . 265 992 NLP Transcription Factor Family AT4G24020 54.3 4.6e-198 688.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23889 PF00564 PB1 7.10E-20 CL0072 Lac TF