Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2273 ATGGGGCAGTCGGTCACACGCTTGGAAGCATCCCTTTCGCACGTGCCACACCCTCCTCTTCAGTCTCACTCCAACGCCTCTCTGTCGAATATTCCACATGCTCGCCCTCACTCTCTCTCTCTCTCTGGAAGCAAGCTGCAAACTCAGCCTCTCAGCCTCTCGTGGTGTTTATGGGGAAGAGCCGTCTCTGTGAGTACTTCAATTCGAAGTTTGGTTTTGATCTCTCAATGTAGCCACTGTGGTGTTTCTACGATGGAAATGAGAGACACTTCACCCTTGACCAGAGCCACCATGGGCATCTGTCTGGTCAAATTTTCTGGCTTGTTGGTCCTTCATGTTCTACTTCTTTCTATGGCAATGAATAAAAGCACTGGCCTCACCTCTGATGGTGAGGCACTTCTAAGCTTTAGGATGGCAGTTTCCAGTTCTGATGGGGTCATCTTTCAGTGGAGACCAGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGCGATCCAAAAACAAAGAGAGTAATCTCATTGAAGCTTGCAAGTCACAAACTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTTGACCAATTAAAGACACTAACTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGCGGAGTGATTCCCTATGAGCTGGGAAGCCTTTCTGAGTTGGAAATGTTAGATGTTTCTAGCAACTCACTTGGTGGAAATATCCCAACGTCCCTTGGGAACTTGGATAAGCTCGCTATTCTCAATGTGTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTTGTTGGAAATCTTGGTTTATGTGGGAAACAAGTCAGTGTCACTTGCAAAGACAATAACACAGGATCTGGAACAAATTCTGAGTCCCCAAGCTCAGGCCAAAATCAAATGAGGAAGAAGTACTCTGGCCGGCTGCTCATAAGTGCATCAGCTACCGTGGGGGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTATAAAAGATTTGGAAAAAATGAAAAGAAAGGTCTTGCAAAGAATGTTGGTGGAGGTGCATCCATTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATTGGTTCTGGTGGTTTTGGAACAGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCATTGAAAAATATTGTAAAAATAAACGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTAAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCGAAACTGTTGATTTATGATTACCTATCAGGGGGCAGCCTTGATGAGGCCCTTCATGAAAGATCTGAGCAATTAGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCCTATCTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTACTTGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGACGATGATAAATCCCACATTACAACCATCGTTGCCGGAACATTTGGTTATTTGGCCCCTGAATATATGCAAAGTGGTAGAGCAACTGAAAAGACCGATGTATATAGTTTTGGAGTCCTGGTACTTGAAGTACTGAGTGGAAAACGACCAACGGATGCATCCTTTATTGAGAAAGGCCTGAACATTGTTGGCTGGCTAAATTTTCTTGTCACGGAGAATAGGCAACGAGAAATAGTTGATTCACAATGTGAAGGAGTGCAGGCAGAAACTCTTGATGCATTGCTCAGGCTTGCTATTCAGTGTGTTTCTTCTAATCCAGACGATCGACCGACCATGCACCGAGTAGTCCAGTTCTTTGAATCTGAGGTTATGACGCCATGCCCAAGTGACTTCGATGATTCCAATTCTGATTAA 2079 43.72 MGQSVTRLEASLSHVPHPPLQSHSNASLSNIPHARPHSLSLSGSKLQTQPLSLSWCLWGRAVSVSTSIRSLVLISQCSHCGVSTMEMRDTSPLTRATMGICLVKFSGLLVLHVLLLSMAMNKSTGLTSDGEALLSFRMAVSSSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLASHKLSGFIAPELGKLDQLKTLTLSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGVIPYELGSLSELEMLDVSSNSLGGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNLGLCGKQVSVTCKDNNTGSGTNSESPSSGQNQMRKKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNEKKGLAKNVGGGASIVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDSQCEGVQAETLDALLRLAIQCVSSNPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41421748 41433481 - Lag0019357.1 Lac5g2273 608915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2273 692 Pfam Protein kinase domain 409 672 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2273 692 SMART serkin_6 407 674 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2273 692 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 256 676 IPR050647 -
Lac5g2273 692 Gene3D Transferase(Phosphotransferase) domain 1 483 681 - -
Lac5g2273 692 SUPERFAMILY Protein kinase-like (PK-like) 389 674 IPR011009 -
Lac5g2273 692 Gene3D Phosphorylase Kinase; domain 1 380 482 - -
Lac5g2273 692 Pfam Leucine rich repeat N-terminal domain 127 166 IPR013210 -
Lac5g2273 692 Gene3D Ribonuclease Inhibitor 126 313 IPR032675 -
Lac5g2273 692 ProSiteProfiles Protein kinase domain profile. 407 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2273 692 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 381 482 - -
Lac5g2273 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 526 538 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2273 692 ProSitePatterns Protein kinases ATP-binding region signature. 413 435 IPR017441 GO:0005524(InterPro)
Lac5g2273 692 Pfam Leucine rich repeat 195 254 IPR001611 GO:0005515(InterPro)
Lac5g2273 692 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 126 288 - -
Lac5g2273 692 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 483 685 - -
Lac5g2273 692 SUPERFAMILY L domain-like 126 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0497 Lac-Chr2:3633493 Lac5g2273 Lac-Chr5:41421748 6.20E-66 dispersed
Lac2g0989 Lac-Chr2:7826581 Lac5g2273 Lac-Chr5:41421748 1.10E-234 dispersed
Lac2g1122 Lac-Chr2:8921133 Lac5g2273 Lac-Chr5:41421748 6.50E-80 dispersed
Lac3g0639 Lac-Chr3:4952665 Lac5g2273 Lac-Chr5:41421748 3.40E-128 dispersed
Lac5g2273 Lac-Chr5:41421748 Lac7g0210 Lac-Chr7:1667519 2.10E-65 dispersed
Lac5g2273 Lac-Chr5:41421748 Lac10g0377 Lac-Chr10:2941527 1.80E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86210 PF00069 Pkinase 1.10E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2273 - - - 0.0