Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2287 ATGGGATCCAGTGGGAGTAAATCGTCGAGAAGTTCGCCGCCGGCGCCGCCATCGTCGTCGTCGTCGGCGGCGGTGGCTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAGGCCGGAGAGTTTTCCAGTCTGCTTGCCTTGGTACGCCCTCTGGATCGCACCATAGCGACAATGACGATAATGATTGTGAAAGTGAGAACAAAAAGAATGCTCATGATTATTCATCTGCAAATCGGACTGCTCAAGCGTTAGATCAGATGAAAATCGAGGGTTACAGAAGGGTCAAAACTGAGGAATCTGTTGAAGTGCCTTGCATTTCATCGAATATCGAGCTTGATGGATGGAGTCAAGCAGGTGTTGATGTAACAGCCCCCAGAGCTGGAAGTACCTCTGCTCGTGCGTCCTCCCTTCAGTCGTTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTTAGCTTCAGATTGAGTAGAGCAAACAGTTTAGGATCATCTAGGTCTTATCCTATGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCTTCATTTATCAGACAGACCTGCCAGAGGCTTGGGTGATAGAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCATCACTGGCTAGGACAACTCGTACTCAAGGTCATGGAGATAGTCCTGCTAATTTTAGGTTAAATACACAAGCTTCTGGTCTTTCTGATAACTTACAAGACAATCAGGCAGTTTCTTCTACCCATGACATGGCTGGTGTTTGTGATAATGCAAGAGTAGAGCCTGATGGAAACCTTTCCCATCCTCGAACTCTACCTGAAGATGTTAGCAGTGAGATTAGACAATCTGACAGACGGACTGGATCTAGGGAACCAGTTGAACGCAATTTTCGTTTCAGTCGGACCCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTAGATCATCATTATCTGACTTCACATTTTGTCCTCAGCAACAAGAGGGAGAGGAGAGAGATGCTAGTCAGAGTGGTGATGACCGACATGTCTGGAATGCGGAGACAAGGGCTTTGTCATCTGAAGATAATGCTATGACCTCTCCAGCAACATCAGGTTATCCAGCTTCTAGTCTATCTAGTTCCTTGTTCAGCACCCAAGATTATGAAATGGAAACTACCCGGCCTAGAGAAGCTAGATATCATGATTTGCTGGAACACCGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGTTCCCAGGTTCGTGCCCTACAGCGGTTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCATGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACCAATATAAACGATAACACCAGTGCTAGAGCTAGTATATCGAGAATTGTAATGTTAGCTGAGGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCGATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGCTGCAAAAGCATCAAAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTACGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTCCACGCAGCATGTGTCGACAAGTGGCTGAAGGAAATCCACAGGGTATGCCCGCTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAAGTGA 1791 46.4 MGSSGSKSSRSSPPAPPSSSSSAAVALSCSGRIRRGRSKGRRVFQSACLGTPSGSHHSDNDDNDCESENKKNAHDYSSANRTAQALDQMKIEGYRRVKTEESVEVPCISSNIELDGWSQAGVDVTAPRAGSTSARASSLQSLNPSSNFLSRFSFIPGNVSFRLSRANSLGSSRSYPMSSTNLSMLNDEDELHLSDRPARGLGDRDETQQGRDLLPASLARTTRTQGHGDSPANFRLNTQASGLSDNLQDNQAVSSTHDMAGVCDNARVEPDGNLSHPRTLPEDVSSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPQQQEGEERDASQSGDDRHVWNAETRALSSEDNAMTSPATSGYPASSLSSSLFSTQDYEMETTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVK 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41550728 41554204 + Lag0019371.1 Lac5g2287 608929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2287 596 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Lac5g2287 596 ProSiteProfiles Zinc finger RING-type profile. 539 581 IPR001841 -
Lac5g2287 596 FunFam Putative RING zinc finger domain superfamily protein 507 586 - -
Lac5g2287 596 SUPERFAMILY RING/U-box 517 587 - -
Lac5g2287 596 MobiDBLite consensus disorder prediction 263 301 - -
Lac5g2287 596 Pfam Ring finger domain 538 581 IPR001841 -
Lac5g2287 596 MobiDBLite consensus disorder prediction 57 75 - -
Lac5g2287 596 SMART ring_2 539 580 IPR001841 -
Lac5g2287 596 MobiDBLite consensus disorder prediction 1 84 - -
Lac5g2287 596 MobiDBLite consensus disorder prediction 1 27 - -
Lac5g2287 596 MobiDBLite consensus disorder prediction 282 301 - -
Lac5g2287 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 586 IPR013083 -
Lac5g2287 596 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 590 - -
Lac5g2287 596 MobiDBLite consensus disorder prediction 359 381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0174 Lac-Chr3:1223426 Lac5g2287 Lac-Chr5:41550728 5.70E-42 dispersed
Lac5g0086 Lac-Chr5:726229 Lac5g2287 Lac-Chr5:41550728 4.90E-09 dispersed
Lac5g2287 Lac-Chr5:41550728 Lac8g2943 Lac-Chr8:46413293 2.90E-07 dispersed
Lac5g2287 Lac-Chr5:41550728 Lac7g0421 Lac-Chr7:3278380 3.70E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2287 - - - 0.0