Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2295 | ATGTTCTCCGCCGTCGTCGCCTTCTTCTTCCTCTTCTTCTTCCATTCCCTCTTCAAATTCTCCGCCGCCGCCCGCCGGAAACTCCCCCTTCCGCCGGGCTCAATGGGCTGGCCTTACATGGGTGAAACCCTCCAACTCTACTCTCAAGATCCCAATGTCTTCTTTGCCTCCAAAAAGAAGAGGTATGGTCCTATTTTCAAGTCCCACATATTGGGTTATCCTTGTGTGATGGTTTCAAGCCCTGAAGCTGTCAAGTTTGTGTTGGTCACTAAAGCTCATCTCTTTAAGCCTACATTTCCAGCTAGTAAAGAGAGGATGTTGGGCAAAAATGCTATCTTCTTTCACCAAGGTGATTACCATGCCAAATTGAGACGCCTCGTCCTCCGAACTTTCATGCCCGAGGCCATCAGAAACATCGTCCCGAGCATCGAGTCCATTGCCAAGAACACCGTTCAATCTTGGGATGGCCAATTGATCAACACCTTCCAAGAAATGAAGATGTTCGCATTCGAGGTTTCGTTGCTTTCGATATTCGGAAAAGACGAAGCTCTTTACTTCGAAGACCTCAAGCGATGCTACTACATTCTCGAAAAAGGCTACAATTCGATGCCGATAAACTTGCCCGGAACACTCTTCCACAAGGCCATGAAAGCAAGGAAGGAACTAGCACATATCTTGAACAAGATCCTCACAACCAGGAGGGAAATGAAGCGCGACTACAACGACCTCCTCGGATCTTTCATGGGTGAAAAGGAAGGCCTCACAGACGAACAGATCGCCGATAACGTCATCGGTCTCATCTTCGCCGCTCGCGACACGACCGCCAGTGTTCTAACATGGATCTTGAAGTACCTAGGAGAAAACCCAAGTGTTCTTCAAGCTGTCACTGCTGAACAAGAAGCAATAATGAAAGAAAAACAGAGTGGAGGAGATGATAATCTCACCTGGGCTGACACCAAAAACATGCCAATCACTTCAAGGGTGATTCAAGAAACTCTAAGAGTGGCCTCAGTTTTATCATTTACTTTCAGAGAAGCAGTGGAAGATGTTGAATTTGATGGATATTTGATCCCAAAAGGATGGAAAGTTTTGCCTCTCTTCAGAAACATTCATCACAGCCCAGAAATTTTCCCTCAGCCTGAAAAGTTTGATCCTTCAAGATTTGAGGTTGCTCAAAAACCCAATACTTACATGCCATTTGGCAATGGGACCCACTCCTGTCCAGGAAATGAATTAGCCAAGCTGGAGATGCTGGTTCTACTCCATCATTTAACCACCCAGTACAGGTGGAATGTAGTGGGAGAACAAGAAGGGATTCAATATGGTCCATTTGCTCTTCCACACAATGGATTGCCCATTAGAATCTCTCTAAAGAAGTAA | 1380 | 45.87 | MFSAVVAFFFLFFFHSLFKFSAAARRKLPLPPGSMGWPYMGETLQLYSQDPNVFFASKKKRYGPIFKSHILGYPCVMVSSPEAVKFVLVTKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRTFMPEAIRNIVPSIESIAKNTVQSWDGQLINTFQEMKMFAFEVSLLSIFGKDEALYFEDLKRCYYILEKGYNSMPINLPGTLFHKAMKARKELAHILNKILTTRREMKRDYNDLLGSFMGEKEGLTDEQIADNVIGLIFAARDTTASVLTWILKYLGENPSVLQAVTAEQEAIMKEKQSGGDDNLTWADTKNMPITSRVIQETLRVASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSPEIFPQPEKFDPSRFEVAQKPNTYMPFGNGTHSCPGNELAKLEMLVLLHHLTTQYRWNVVGEQEGIQYGPFALPHNGLPIRISLKK | 459 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 41621638 | 41623796 | - | Lag0019379.1 | Lac5g2295 | 608937 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2295 | 459 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 400 | 409 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac5g2295 | 459 | Gene3D | Cytochrome P450 | 20 | 457 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | SUPERFAMILY | Cytochrome P450 | 25 | 455 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PANTHER | CYTOCHROME P450 26 | 29 | 428 | - | GO:0004497(PANTHER)|GO:0009687(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| Lac5g2295 | 459 | CDD | CYP90-like | 60 | 456 | - | - | |
| Lac5g2295 | 459 | FunFam | Abscisic acid 8 | 20 | 457 | - | - | |
| Lac5g2295 | 459 | PRINTS | E-class P450 group I signature | 59 | 78 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | E-class P450 group I signature | 258 | 275 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | E-class P450 group I signature | 366 | 390 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | E-class P450 group I signature | 397 | 407 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | E-class P450 group I signature | 326 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | E-class P450 group I signature | 407 | 430 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | E-class P450 group I signature | 278 | 304 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | P450 superfamily signature | 407 | 418 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | P450 superfamily signature | 398 | 407 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | P450 superfamily signature | 327 | 338 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | PRINTS | P450 superfamily signature | 269 | 286 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac5g2295 | 459 | Pfam | Cytochrome P450 | 31 | 435 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g1713 | Lac-Chr2:15881027 | Lac5g2295 | Lac-Chr5:41621638 | 2.60E-79 | dispersed | |
| Lac4g1633 | Lac-Chr4:35006530 | Lac5g2295 | Lac-Chr5:41621638 | 8.00E-148 | dispersed | |
| Lac5g2295 | Lac-Chr5:41621638 | Lac7g2750 | Lac-Chr7:46655566 | 1.10E-158 | dispersed | |
| Lac5g2295 | Lac-Chr5:41621638 | Lac2g0312 | Lac-Chr2:2326752 | 2.10E-154 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g2295 | K09843 | - | csv:101212508 | 861.677 |