Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2314 ATGAAGATTATCAATTATAATCTCCTCACCAACATTGCTCTCTCTTCTCTCATCCCTCTCCTTGCTTTCCTCCTCCTCAATCCCGCCCCTTGCTTTCTCTCCGACCTCGACTTTTCCTTCCTCCGCCACCTTGTCGATTGCCATCATCATCACCACCACCGTCGTCACCACCACCACCACCATCATCACCATCACAAAAGTCCGACGGACGAAGAAGACCAAGCAGCCATCAGTTCCATTTGCGACACGTTCCCAACCAGTCTTCTCCCACCAGAAACAACCAACACTTCTGTTTTCTGCGTCGATCGAAACGGTTGTTGCAACTTCACGACGGTTCAGGCTGCAATCGACGCCGTACCAAACCTGAGCCCGAAACGGAGCGTGATATGGATCAACAACGGAATCTACTATGAGAAGGTGATGGTTCCAAGATCAAAACCGAACGTGACATTTCAAGGACAAGGCTACACGACCACGGCCATTGTTTGGAACGACACTGCCAACTCTTCGCATGGGACTTTTTACAGTGGCTCTGTTCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGACATCGGAGCGCAGGCGGTGGCGATCAGAATCGGCGGCGACCAGGCGGCGTTTTGGAGCTGCGGATTCTTCGGCGCCCAAGACACTCTCCACGACGACCGCGGCCGCCATTACTTCAAGGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGCAACGGAAGATCCTTCTACGAGGGTTGCCAGTTGATTTCGATGGCGAATCCGGTGGCGCAAGGATCGAAGTTCGTGAACGGAGCAGTGACGGCGCACGGCAGAGCCTCCGCCGAGGAGAACTCTGGATTTGCGTTTGTTAATTGCAGCATCGGTGGGACGGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTCGCCAACACCGTCATGACGGATATTATTGCGTCGGAGGGGTGGAATGACTTTAATGACCCTGCCAGAGACCAGACAGTGTTCTATGGAGAGTACAACTGCAGTGGAGCAGGAGCCAATCTAACTGCAAGGGCTCCCTTTGTTCAGAGGCTCAATGATACACAAGCTTCCCCTTTCCTCAACTTATCCTTCATTGATGCTGACCAATGGCTCCAACCCTATTAA 1200 52.83 MKIINYNLLTNIALSSLIPLLAFLLLNPAPCFLSDLDFSFLRHLVDCHHHHHHRRHHHHHHHHHHKSPTDEEDQAAISSICDTFPTSLLPPETTNTSVFCVDRNGCCNFTTVQAAIDAVPNLSPKRSVIWINNGIYYEKVMVPRSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGDIGAQAVAIRIGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYEGCQLISMANPVAQGSKFVNGAVTAHGRASAEENSGFAFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIASEGWNDFNDPARDQTVFYGEYNCSGAGANLTARAPFVQRLNDTQASPFLNLSFIDADQWLQPY 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41792956 41797579 - Lag0019398.1 Lac5g2314 608956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2314 399 Pfam Pectinesterase 101 392 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac5g2314 399 ProSitePatterns Pectinesterase signature 2. 247 256 IPR033131 -
Lac5g2314 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 80 397 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Lac5g2314 399 Gene3D - 97 399 IPR012334 -
Lac5g2314 399 FunFam Pectinesterase 93 399 - -
Lac5g2314 399 SUPERFAMILY Pectin lyase-like 97 398 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2954 Lac-Chr10:44140940 Lac5g2314 Lac-Chr5:41792956 9.40E-106 dispersed
Lac5g2314 Lac-Chr5:41792956 Lac6g0425 Lac-Chr6:3474344 4.40E-68 dispersed
Lac5g2314 Lac-Chr5:41792956 Lac9g0229 Lac-Chr9:3632111 4.20E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2314 - - - 0.0