Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2324 ATGCTTCGCAGCTTAATCCCTCAATTCCCAATCAATTCCACTTCCAATTCCCACTCCAATTCCACTTCCATGAAGTCCAAGCGCTCCGACAGGGACCCCGCCGACGCCGACTCCACCGCCGATGACCCTTCCGCCAAGCGCTTCAATTCTGCCCTCACCAACTTCGACGCCGGCGCCTCCGGCGAGAAGCCCGTCGAGGACGAGGAGGACGAGGAAGAGGAGCCGCTTCTCGAGGGCAGCGAGTCCACTGGTCTGAGACTGCTTGGGCTTCTCCTTCAATGCGCCGAGTGCGTTGCTATGGATAATCTGCAGGAGGCGAACGATCTCTTGCCGGAGATCTCGGAGCTGTCCTCGCCGTTCGGGACCTCGCCTGAGCGCGTCGGCGCGTACTTCGCGCACGCGCTTCAGGCCAGAGTGATAAGCTCCTGCTTGGGAACGTACTCGCCCTTGACGATCAGAACGCTGAATCAAACTCAGTCGCAGAGGATGTTCAATGCTCTGCAATCCTACAATTCGATCAGTCCGTTGATCAAGTTCTCTCACTTCACCGCCAATCAAGCCATCTTCCAAGCCTTGGACGGGGAAGATCGAGTCCACGTTATCGACCTCGACGTAATGCAAGGTCTTCAATGGCCTGGATTGTTCCACATCCTCGCCTCCCGCCCTAAGAAAATCCAATCCCTACGAATCTCCGGCTTCGGATCCTCTTCCGATTTGCTCCAATCGACCGGAAGGAGACTCGCGGATTTCGCAAGCTCCCTCGGACTCCCGTTCGAGTTCCATCCAGTGGAAGGCAAAATCGGAAACCTAACGGACCCTAACCAACTGGAATTGAGGCCCGGCGAGGCTCTGGTCGTTCACTGGATGCAGCATTGCTTGTACGACATTACCGGCAGCGATTTAGGTACGCTGAGATTGCTTTCAACCCTAAAACCTAAACTGATCACCATTGTCGAACAGGATTTGAGCCATGGGGGCAGTTTTCTAGGAAGATTCGTCGAAGCTCTTCACTATTACAGCGCGTTGTTCGACGCGCTCGGCGATAGTTTGGCCATGGATAGCTTGGAAAGGCATGTGGTGGAGCAGCAATTGTTCGGCTGTGAGATTAGGAACATTATCGCCGTTGGTGGACCCAAACGAACTGGCGAAGTGAAGGTGGAGAGATGGGGCGATGAACTCAAAGGGGTCGGGTTTCGACCCGTTTCTCTTGGGGGAAACCCGGCTGCTCAGGCCAGTTTGCTTCTGGGTATGTTCCCTTGGAAAGGCTATACTCTGGTTGAAGAAAATGGCTGCCTCAAGCTGGGCTGGAAGGATCTATCTCTGCTCACAGCCTCAGCCTGGCACCCCTCTGGCTCTGATGATTGA 1365 55.09 MLRSLIPQFPINSTSNSHSNSTSMKSKRSDRDPADADSTADDPSAKRFNSALTNFDAGASGEKPVEDEEDEEEEPLLEGSESTGLRLLGLLLQCAECVAMDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLTIRTLNQTQSQRMFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRPKKIQSLRISGFGSSSDLLQSTGRRLADFASSLGLPFEFHPVEGKIGNLTDPNQLELRPGEALVVHWMQHCLYDITGSDLGTLRLLSTLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLAMDSLERHVVEQQLFGCEIRNIIAVGGPKRTGEVKVERWGDELKGVGFRPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWHPSGSDD 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 41913067 41914431 - Lag0019408.1 Lac5g2324 608966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2324 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 63 447 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
Lac5g2324 454 MobiDBLite consensus disorder prediction 24 42 - -
Lac5g2324 454 ProSiteProfiles GRAS family profile. 78 448 IPR005202 -
Lac5g2324 454 MobiDBLite consensus disorder prediction 63 78 - -
Lac5g2324 454 MobiDBLite consensus disorder prediction 7 23 - -
Lac5g2324 454 MobiDBLite consensus disorder prediction 1 81 - -
Lac5g2324 454 Pfam GRAS domain family 89 447 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1733 Lac-Chr1:38814148 Lac5g2324 Lac-Chr5:41913067 2.20E-133 dispersed
Lac4g1901 Lac-Chr4:38351788 Lac5g2324 Lac-Chr5:41913067 3.80E-87 dispersed
Lac5g2324 Lac-Chr5:41913067 Lac8g2990 Lac-Chr8:46753538 7.80E-77 dispersed
Lac5g2324 Lac-Chr5:41913067 Lac3g0856 Lac-Chr3:6861724 9.50E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23893 PF03514 GRAS 1.20E-115 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2324 K27742 - csv:101212169 712.22