Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2338 ATGTTATCGGGGTGGTCTAGTGAACTTGTTATGGGTTTCTCGGTGTGGCGGTGCTGGAGATGCAAGCAATTCGAGCTCCGCTCAACTATTCGCATGGAAGTCTGGAAGAAGAAGAAGATGAAGGTGGTTTGGTTGATTGCAGTTTCAGTAATGGTGATTCTGATGTTACAGAGATTTTGGATGCCATCTTTGGATTTTAATCAGCTCTGGACAACTGTTGCTCAACATGGCTCCTCGAACAATGACAAGTTCATCAATGGCCTTCTTCCTCCCAGCTTCAATGAAAAATACTGCTTAAGCCGATACCAATTGAATCTCTACAGAAAGCCCTCTCCCCACAAGCCTTCCTCCCCTCTTCTCTCAAAGCTCCGCCGTTACGAAGCCCTCCACCGCCGCTGTGGCCCCAATTCACCTTCCTTCCACCGAGCCCTCGCCGGTCTCACTTCACCCAGAAACTCCACAACCCTATCGGACGATTGCAAATATGCCGTTATTTTGACTCGCGACGGCCTCGGCAATCGAATTCTTGCCATAATCTCTGCCTTCTTCTACGCCCTGATCTCCGACCGCGTCCTTCTAATCGACCGAGGCAATGCTCTTGATGATCTCTTCTGCGAGCCCTTTCTTGGATCCTCTTGGCTTCTGCCGTCGGATTTCCCTCTCCGCCGCGAATTTGGGTCGTTCCGCCAGTCCTTCCCGGGGTCTTTTGGCAACATTTTGAGAAATGGGATGATGAAGAAAACCATTGAAGATCTGCCTCCGGCTTATTTGTACCTTCATCTCTCTCACGATGCCGACGATTACGATAAACTCTTTTACTGCGATCGGCAGCAGAGTCTTCTGACGAAGGTGCCATGGCTGATTATGGAGACGAACAACTATCTGGTTCCAGGGTTTTTTCTAGTTTCTTCTTTCAGAAAAGAGCTTGAGAAGCTATTTTCGACGAAGGACACTGTGTTCCACCATCTCGGTAGGTACCTCTTCCACCCGACGAACAGCGTCTGGGGGCTGATTTCGAGATCTTACAAGCCGTATCTCGCTAGAGCGAACGAAATGGTTGGGATTCAGATTCGGGTTTTTGGATCGGAATCTGGGTCGGTTCAGGATCAGATGAATCAGCTTCTCGCTTGCACACAGAAGAAGAAATTACTACCGGAGGTCGATTTGTCGTCGTCGGAGAAGACGAATTCCACCACTTCTCAGAGAGTGAAAGTCGTGCTGGTGACATCTCTAAGCTCTCAGTATTCAGAAACTCTAAAGGACATGTACTTGGAGCATCCAGCCGTCGACGGCGAGGTGGTGGCGGTGTACCAACCGAGCCACGAGGGGGTTCAGAGCTCCGACAAGATGCTGCACAACCGGAAGGCGCTGGCAGAAATATACCTTCTGAGCTTGAGCGACGTGCTGGTGACGAGCGATTGGTCGACGTTTGGGTATGTGGCACAGGGGTTGGCCGGAGTTAAGCCATGGATGTTGTACAAGGCGGAGGAGAAGGTGTTTTGGCCGATGCAGCCATGGCTGAAGTACAGAACGAGGAAAGAGACAACCGATGATTGGCCGTGCCGGCAGGCGGCGTCGATGGAACCTTGCTTCCACACGCCGCCGGTGTGCGATTGCAATGAGATGAAGAGAAGAGATGGAGGGAATGTTTTGCCGTTTGTAACGCATTGTGAAGATGCGAGTTGGGGCCTCAAGTTGGTTGATAGAGATTAG 1713 50.79 MLSGWSSELVMGFSVWRCWRCKQFELRSTIRMEVWKKKKMKVVWLIAVSVMVILMLQRFWMPSLDFNQLWTTVAQHGSSNNDKFINGLLPPSFNEKYCLSRYQLNLYRKPSPHKPSSPLLSKLRRYEALHRRCGPNSPSFHRALAGLTSPRNSTTLSDDCKYAVILTRDGLGNRILAIISAFFYALISDRVLLIDRGNALDDLFCEPFLGSSWLLPSDFPLRREFGSFRQSFPGSFGNILRNGMMKKTIEDLPPAYLYLHLSHDADDYDKLFYCDRQQSLLTKVPWLIMETNNYLVPGFFLVSSFRKELEKLFSTKDTVFHHLGRYLFHPTNSVWGLISRSYKPYLARANEMVGIQIRVFGSESGSVQDQMNQLLACTQKKKLLPEVDLSSSEKTNSTTSQRVKVVLVTSLSSQYSETLKDMYLEHPAVDGEVVAVYQPSHEGVQSSDKMLHNRKALAEIYLLSLSDVLVTSDWSTFGYVAQGLAGVKPWMLYKAEEKVFWPMQPWLKYRTRKETTDDWPCRQAASMEPCFHTPPVCDCNEMKRRDGGNVLPFVTHCEDASWGLKLVDRD 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42048607 42051945 + Lag0019422.1 Lac5g2338 608980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2338 570 Gene3D - 340 498 - -
Lac5g2338 570 PANTHER FUCOSYLTRANSFERASE 2-RELATED 36 568 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Lac5g2338 570 Gene3D - 157 206 - -
Lac5g2338 570 FunFam Galactoside 2-alpha-L-fucosyltransferase 158 209 - -
Lac5g2338 570 Pfam Xyloglucan fucosyltransferase 78 539 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1679 Lac-Chr10:18535328 Lac5g2338 Lac-Chr5:42048607 2.50E-157 dispersed
Lac5g2337 Lac-Chr5:42041121 Lac5g2338 Lac-Chr5:42048607 6.20E-297 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2338 K13681 - csv:101222105 867.455