Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2349 ATGACTTGCTTCCCTTTTTTCTTCAGTAAGAGGGTAAAGCCCCCAACAAGAAGTTTTGACGATAGTGAAGAACTTTCAGGCCTTCACAATGTTAGATTTTACACATACAAAGAGCTAAAAGTTGCAACTGAAGATTTCAGCTTGGCAAATAAAATAGGGGAGGGCGGTTTTGGTCCTGTCTACAAGGGAAAGCTAAGAGATGGAAAGATTGCTGCCATAAAAGTTCTTTCGGCTGAATCAAGACAAGGATTGAGGGAATTCTTGACAGAAATCAATGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGATGATAATCATAGGATTCTTGTCTACAATTACCTTGAGAACAATAGCCTTGCACAAACTCTTCTTGGGCGAGGTTACAGTAGCATCCAGTTCGATTGGCAAACAAGGTCTAAAATTTGTATCGGAATTGCGCGTGGGCTTGCCTTCCTTCACGAGGATGTACAGCCACATATCATCCATAGAGATATCAAAGCAAGTAATATTCTTCTTGACCGTGATCTCACTCCTAAAATTTCAGATTTCGGTCTCGCAAAGCTTATTCCAGCCAGCATGACTCATGTCAGTACACGAGTGGCCGGAACAATTGGTTACCTGGCACCGGAATATGCTATAAGAGGGCAGGTGACAAGAAAATCAGATATTTACAGTTTCGGCGTCCTTCTTGTGGAAATAGTCAGCGGGAGGTGCAACACAAATACGCAGTTACCGATTGGAGAACAATATCTTCTCGAAAGGACATGGAATCTTTACGAGCGAGGAGAGCTCGTTCTGCTAGTAGATATGTCCTTAAACGGCGACTTCGATGCTGAGGAGGCTTGTAAATATCTAAAGATTGGTCTACTTTGCACGCAAGACAGTCCGAAGCTCCGTCCATCAATGTCGACTGTGGTAAAGATGCTAACGGGCGAGATCAGTATCGAAGATAGAAAGATAACGAAACCAGGGCTGATTTCAGACTTCATGGATCTAAAAGTAAAGAATCCAGTGCAAAAGAAAGAGAACAGAGGGGAAGGAGTGTCTGATGATAGTCTGTCCTCTGGATCAAACACCCATGGACATTCAACAATGTCATATGAAACCTCAACTGTTACAACTCCAACCTTCACTGCACAGTATGACAGGAACACTTTCTCATCTGTACTGTGA 1197 42.77 MTCFPFFFSKRVKPPTRSFDDSEELSGLHNVRFYTYKELKVATEDFSLANKIGEGGFGPVYKGKLRDGKIAAIKVLSAESRQGLREFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGYSSIQFDWQTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDRDLTPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNTNTQLPIGEQYLLERTWNLYERGELVLLVDMSLNGDFDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEISIEDRKITKPGLISDFMDLKVKNPVQKKENRGEGVSDDSLSSGSNTHGHSTMSYETSTVTTPTFTAQYDRNTFSSVL 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42133937 42136612 + Lag0019433.1 Lac5g2349 608991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2349 398 SUPERFAMILY Protein kinase-like (PK-like) 20 317 IPR011009 -
Lac5g2349 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2349 398 CDD STKc_IRAK 52 319 - -
Lac5g2349 398 SMART serkin_6 46 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2349 398 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Lac5g2349 398 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 352 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lac5g2349 398 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2349 398 FunFam cold-responsive protein kinase 1 17 121 - -
Lac5g2349 398 Pfam Protein kinase domain 48 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2349 398 FunFam cold-responsive protein kinase 1 122 333 - -
Lac5g2349 398 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Lac5g2349 398 MobiDBLite consensus disorder prediction 357 377 - -
Lac5g2349 398 MobiDBLite consensus disorder prediction 345 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3206 Lac-Chr10:46198050 Lac5g2349 Lac-Chr5:42133937 3.90E-93 dispersed
Lac1g2119 Lac-Chr1:42658159 Lac5g2349 Lac-Chr5:42133937 5.60E-102 dispersed
Lac5g2349 Lac-Chr5:42133937 Lac5g2388 Lac-Chr5:42607209 5.50E-135 dispersed
Lac5g2349 Lac-Chr5:42133937 Lac12g0842 Lac-Chr12:8764084 1.10E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86212 PF00069 Pkinase 2.00E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2349 - - - 0.0