Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2356 ATGGACGACGATTTCTCCATCTTCCCTCCCGATTCAGATCTCGACTTCAGCTTCACCTCCACCTCCACCGCCACCGACCGCACCTTCGCCTCCTCCAGCGCCCGCAGCAGTCTCGCCAGAAGCAGCCTTACTCTCAGCTTCAACGAGTCCCGTCTCTCCGCCGCTGCTGCCGCCCTCAACCTCCACCCGCACCGTCACTCCGACCCGCACTGGTCCGCCATCAAAGCCGCCACCACTCTCTCTTCCGACGGCCACCTCCACCTCCGTCACCTGAAACTCATCCGCCACCTCGGCACCGGCAACCTCGGCCGCGTGTTCCTCTGCCATTTGAGGGACAACGACCACGCCAGTTTCGCGCTCAAGGTCGTCGACAGGGAGGCTCTGAGCAACAAGAAGCTTTTGCAGGTTCAAACGGAAGCCGAGATTCTCGCCTTGCTGGACCACCCTTTTCTCCCCACTCTCTACGCGCGTCTCGACGTTTCTCACTACACGTGCCTCCTCATCGACTACTGCCCCGCCGGCGACCTCCACTCCCTCCTCCGCAAACAGCCCGGAAATCGACTCTCGGTCTCGGCGGCGAGATTCTTCGCCGCCGAGGTCCTGGTGGCGCTCGAGTACCTTCACGCGCTCGGGATCGTGTACCGGGATCTCAAGCCTGAGAACGTTCTTTTGCGTGAGGATGGACACGTCATGCTCTCTGATTTCGACTTGTGCTTTAAGTCCGACGTGGTCCCCACTTTTCACACGTGGACGCGGCGGGGACCACAGGGCAGTGGCTGTTTCGGGTTGAGGACGGCTGCGGCGGCGGAGGAGGAGATTGTGGGGGAGTTTGTGGCGGAGCCGACGGCGGCGTTTTCCAAGTCGTGTGTGGGGACTCATGAGTATTTGGCGCCGGAGTTGGTGGCCGGCAGTGGCCACGGTAACGGCGTCGACTGGTGGGCGTTTGGGGTGTTCGTTTACGAGCTCCTGCACGGGACGACGCCGTTTAAGGGAGTCAACAAGGAGGGGACACTAAGAAACATTGCGTTGTCGGACGGGGTGAAGTTCCGGGCGGCGGCGGCGGCGGATGAAGAGGAGGGGATGGGGGAGGCGAGGGATCTGATAGAGCGGCTGCTGGTGAAGGATCCGGCGAGGCGGATGGGGTCCGGCAAAGGGGCGACGGAGATCAAACGGCATCCGTTCTTCGACGGGATAAAGTGGCCGTTGATCCGGACGTACCGGGCGCCGGAGGTGTATGGGCTGATGAGAAAAGCGAGATCGCACGTGAGCCACGTGACTGGCGTGACCCACCGCATGCGGCGGCGGGGGTGGTGGAACTGGAAGAAGCTGAGTAACTGTTTAATGAAAAATGGAAGTTCCAGTAAATCTCATACCAATACCAATTATTACAGTTATACCGCCAAAAATAAGAAGGGTTAA 1419 60.39 MDDDFSIFPPDSDLDFSFTSTSTATDRTFASSSARSSLARSSLTLSFNESRLSAAAAALNLHPHRHSDPHWSAIKAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDREALSNKKLLQVQTEAEILALLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGNRLSVSAARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVVPTFHTWTRRGPQGSGCFGLRTAAAAEEEIVGEFVAEPTAAFSKSCVGTHEYLAPELVAGSGHGNGVDWWAFGVFVYELLHGTTPFKGVNKEGTLRNIALSDGVKFRAAAAADEEEGMGEARDLIERLLVKDPARRMGSGKGATEIKRHPFFDGIKWPLIRTYRAPEVYGLMRKARSHVSHVTGVTHRMRRRGWWNWKKLSNCLMKNGSSSKSHTNTNYYSYTAKNKKG 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42230505 42231923 + Lag0019440.1 Lac5g2356 608998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2356 472 CDD STKc_phototropin_like 89 411 - -
Lac5g2356 472 PANTHER FLIPPASE KINASE 1-RELATED 37 414 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac5g2356 472 ProSiteProfiles Protein kinase domain profile. 91 395 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2356 472 Gene3D Transferase(Phosphotransferase) domain 1 175 241 - -
Lac5g2356 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2356 472 FunFam Probable serine/threonine-protein kinase cot-1 174 416 - -
Lac5g2356 472 Gene3D Phosphorylase Kinase; domain 1 90 174 - -
Lac5g2356 472 Pfam Protein kinase domain 93 239 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2356 472 Pfam Protein kinase domain 286 395 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2356 472 SUPERFAMILY Protein kinase-like (PK-like) 89 462 IPR011009 -
Lac5g2356 472 Gene3D Transferase(Phosphotransferase) domain 1 286 408 - -
Lac5g2356 472 SMART serkin_6 91 395 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2356 472 MobiDBLite consensus disorder prediction 449 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2356 Lac-Chr5:42230505 Lac6g2951 Lac-Chr6:47118528 4.00E-92 dispersed
Lac5g2356 Lac-Chr5:42230505 Lac1g0981 Lac-Chr1:25756996 6.00E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86213 PF00069 Pkinase 2.50E-52 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2356 - - - 0.0