Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2356 | ATGGACGACGATTTCTCCATCTTCCCTCCCGATTCAGATCTCGACTTCAGCTTCACCTCCACCTCCACCGCCACCGACCGCACCTTCGCCTCCTCCAGCGCCCGCAGCAGTCTCGCCAGAAGCAGCCTTACTCTCAGCTTCAACGAGTCCCGTCTCTCCGCCGCTGCTGCCGCCCTCAACCTCCACCCGCACCGTCACTCCGACCCGCACTGGTCCGCCATCAAAGCCGCCACCACTCTCTCTTCCGACGGCCACCTCCACCTCCGTCACCTGAAACTCATCCGCCACCTCGGCACCGGCAACCTCGGCCGCGTGTTCCTCTGCCATTTGAGGGACAACGACCACGCCAGTTTCGCGCTCAAGGTCGTCGACAGGGAGGCTCTGAGCAACAAGAAGCTTTTGCAGGTTCAAACGGAAGCCGAGATTCTCGCCTTGCTGGACCACCCTTTTCTCCCCACTCTCTACGCGCGTCTCGACGTTTCTCACTACACGTGCCTCCTCATCGACTACTGCCCCGCCGGCGACCTCCACTCCCTCCTCCGCAAACAGCCCGGAAATCGACTCTCGGTCTCGGCGGCGAGATTCTTCGCCGCCGAGGTCCTGGTGGCGCTCGAGTACCTTCACGCGCTCGGGATCGTGTACCGGGATCTCAAGCCTGAGAACGTTCTTTTGCGTGAGGATGGACACGTCATGCTCTCTGATTTCGACTTGTGCTTTAAGTCCGACGTGGTCCCCACTTTTCACACGTGGACGCGGCGGGGACCACAGGGCAGTGGCTGTTTCGGGTTGAGGACGGCTGCGGCGGCGGAGGAGGAGATTGTGGGGGAGTTTGTGGCGGAGCCGACGGCGGCGTTTTCCAAGTCGTGTGTGGGGACTCATGAGTATTTGGCGCCGGAGTTGGTGGCCGGCAGTGGCCACGGTAACGGCGTCGACTGGTGGGCGTTTGGGGTGTTCGTTTACGAGCTCCTGCACGGGACGACGCCGTTTAAGGGAGTCAACAAGGAGGGGACACTAAGAAACATTGCGTTGTCGGACGGGGTGAAGTTCCGGGCGGCGGCGGCGGCGGATGAAGAGGAGGGGATGGGGGAGGCGAGGGATCTGATAGAGCGGCTGCTGGTGAAGGATCCGGCGAGGCGGATGGGGTCCGGCAAAGGGGCGACGGAGATCAAACGGCATCCGTTCTTCGACGGGATAAAGTGGCCGTTGATCCGGACGTACCGGGCGCCGGAGGTGTATGGGCTGATGAGAAAAGCGAGATCGCACGTGAGCCACGTGACTGGCGTGACCCACCGCATGCGGCGGCGGGGGTGGTGGAACTGGAAGAAGCTGAGTAACTGTTTAATGAAAAATGGAAGTTCCAGTAAATCTCATACCAATACCAATTATTACAGTTATACCGCCAAAAATAAGAAGGGTTAA | 1419 | 60.39 | MDDDFSIFPPDSDLDFSFTSTSTATDRTFASSSARSSLARSSLTLSFNESRLSAAAAALNLHPHRHSDPHWSAIKAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDREALSNKKLLQVQTEAEILALLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGNRLSVSAARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVVPTFHTWTRRGPQGSGCFGLRTAAAAEEEIVGEFVAEPTAAFSKSCVGTHEYLAPELVAGSGHGNGVDWWAFGVFVYELLHGTTPFKGVNKEGTLRNIALSDGVKFRAAAAADEEEGMGEARDLIERLLVKDPARRMGSGKGATEIKRHPFFDGIKWPLIRTYRAPEVYGLMRKARSHVSHVTGVTHRMRRRGWWNWKKLSNCLMKNGSSSKSHTNTNYYSYTAKNKKG | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 42230505 | 42231923 | + | Lag0019440.1 | Lac5g2356 | 608998 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2356 | 472 | CDD | STKc_phototropin_like | 89 | 411 | - | - | |
Lac5g2356 | 472 | PANTHER | FLIPPASE KINASE 1-RELATED | 37 | 414 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Lac5g2356 | 472 | ProSiteProfiles | Protein kinase domain profile. | 91 | 395 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac5g2356 | 472 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 241 | - | - | |
Lac5g2356 | 472 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 212 | 224 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac5g2356 | 472 | FunFam | Probable serine/threonine-protein kinase cot-1 | 174 | 416 | - | - | |
Lac5g2356 | 472 | Gene3D | Phosphorylase Kinase; domain 1 | 90 | 174 | - | - | |
Lac5g2356 | 472 | Pfam | Protein kinase domain | 93 | 239 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac5g2356 | 472 | Pfam | Protein kinase domain | 286 | 395 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac5g2356 | 472 | SUPERFAMILY | Protein kinase-like (PK-like) | 89 | 462 | IPR011009 | - | |
Lac5g2356 | 472 | Gene3D | Transferase(Phosphotransferase) domain 1 | 286 | 408 | - | - | |
Lac5g2356 | 472 | SMART | serkin_6 | 91 | 395 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac5g2356 | 472 | MobiDBLite | consensus disorder prediction | 449 | 472 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2356 | Lac-Chr5:42230505 | Lac6g2951 | Lac-Chr6:47118528 | 4.00E-92 | dispersed | |
Lac5g2356 | Lac-Chr5:42230505 | Lac1g0981 | Lac-Chr1:25756996 | 6.00E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86213 | PF00069 | Pkinase | 2.50E-52 | CL0016 | Lac | PK |
Pathway information
