Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2385 | ATGGAAACCACTGCCGTACGGCCTCCGATCTGCGTCGGTTTTTTGCCGCTCATTTTGCTGGTTTTTGTTTCAGTCCACTTTCGAGGGCTTTCAAGCTTCTTCTGGGTTTCTGCTTTTTGTTTTGTTTTGTGGGAATCTGAGGGTTTTCGATCTGGGGTTTTTGGTTTTTGGTTTTTGGTTTGTGGGGTTGTAGAGACCGATCTTGGACTTGTCACTTTTCGCTGGTTTTGTGTGTGGCGAATGCGGGAGGCCAAAGAAATCAACTTTTTTACTGAATATGGGGATGCTAATAGATATGAGATTCTTGAAGTTATTGGAAAGGGAAGTTATGGAGTTGTTTGTTCTGCTATTGACTTGCAAACCAGGGAGAAAGTTGCAATAAAGAGAATTCATGATATTTTTGATCACGTATCTGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTACGGCATCCTGATATTGTTGACATCAAGCATATTATGCTCCCACCTTCTAAAAAGGAATTTAAAGACATTTATGTGGTTTTTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGACTTGACCCGTGAACATCATCAGTTCTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATTCAGCAAATGTGTATCATAGAGATCTGAAGCCAAAGAATATATTGGCAAATGCCAATTGCAAGCTTAAAATTTGTGATTTTGGACTTGCAAGAGTTGCTTTCAGTGATGCCCCAACTACAATATTTTGGACAGACTATGTTGCTACTAGATGGTACAGAGCTCCGGAGCTGTGTGGATCATTCTGTTCCAAGTATACTCCCGCGATAGATATTTGGAGCATTGGCTGCATATTTGCTGAGGTCTTCATGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCCCATCAATTGGACTTGATTACCGATCTTCTAGGGACTCCCTCATTGGAGACCATTGCAGGAGTTCGGAATGAGAAGGCCAGGAAATACTTGACAGAAATGAGAAAGAAATCTCCAGTGCCGTTTTCACAAAGGTTTCCCAATGCGGATCCTACAGCCATCCGCTTATTGCAAAGGCTATTAGCATTTGATCCGAAGGATCGACCATCGGCTGTGGAGGCTCTGGCTGATCCTTACTTTAAGGGCCTAGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCAATCTCAAGATCGGAATTCGAGTTCGAGAGACGGAAATTAACGAAGGATGATGTAAGGGGATTATTATATAGAGAAATATTAGAATATCATCCTCAAATTCGTGAAGATTATTTGAATGGAACAGAGACTACAAAGCTCCTCTTTCCTAGTGTTACAGGTCATTTTAAAAGCCAATTCACCTACCACAAAGAGAATAGTGGTAAAAGTGCACCGGTTTTGCCTCTAGAACGGAAACACTTCTCCCTCCCACGGTCTACTGTTTGCACCAATTTGGTTTCACCGGATCGTGAGCCGGTTCGGCGAAATCCCAAAGTCTCTAATAATAGTGTGGGATTACCTGATAGAAAATTTGGGAATCCATCAAAGGCTCATCCTCCACCTAAAGTGCCTACTGGACGAGTTTCGGGTCCAGTACTCCCATACGAGAACAGAAGCATAAAAGATGTTTATTCGAGACTAACGTCGCAAATTAGAAGTTTGGATTTGTGA | 1701 | 41.92 | METTAVRPPICVGFLPLILLVFVSVHFRGLSSFFWVSAFCFVLWESEGFRSGVFGFWFLVCGVVETDLGLVTFRWFCVWRMREAKEINFFTEYGDANRYEILEVIGKGSYGVVCSAIDLQTREKVAIKRIHDIFDHVSDAIRILREVKLLRLLRHPDIVDIKHIMLPPSKKEFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHSANVYHRDLKPKNILANANCKLKICDFGLARVAFSDAPTTIFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSIGCIFAEVFMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKARKYLTEMRKKSPVPFSQRFPNADPTAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDVRGLLYREILEYHPQIREDYLNGTETTKLLFPSVTGHFKSQFTYHKENSGKSAPVLPLERKHFSLPRSTVCTNLVSPDREPVRRNPKVSNNSVGLPDRKFGNPSKAHPPPKVPTGRVSGPVLPYENRSIKDVYSRLTSQIRSLDL | 566 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 42576233 | 42580658 | - | Lag0019469.1 | Lac5g2385 | 609027 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2385 | 566 | ProSitePatterns | MAP kinase signature. | 134 | 237 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac5g2385 | 566 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 96 | 431 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
| Lac5g2385 | 566 | SMART | serkin_6 | 99 | 390 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac5g2385 | 566 | Pfam | Protein kinase domain | 99 | 390 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac5g2385 | 566 | FunFam | Mitogen-activated protein kinase | 185 | 413 | - | - | |
| Lac5g2385 | 566 | Gene3D | Transferase(Phosphotransferase) domain 1 | 185 | 413 | - | - | |
| Lac5g2385 | 566 | SUPERFAMILY | Protein kinase-like (PK-like) | 94 | 394 | IPR011009 | - | |
| Lac5g2385 | 566 | MobiDBLite | consensus disorder prediction | 497 | 541 | - | - | |
| Lac5g2385 | 566 | Gene3D | Phosphorylase Kinase; domain 1 | 114 | 436 | - | - | |
| Lac5g2385 | 566 | FunFam | Mitogen-activated protein kinase | 88 | 193 | - | - | |
| Lac5g2385 | 566 | CDD | STKc_TDY_MAPK | 98 | 435 | - | - | |
| Lac5g2385 | 566 | ProSitePatterns | Protein kinases ATP-binding region signature. | 105 | 128 | IPR017441 | GO:0005524(InterPro) | |
| Lac5g2385 | 566 | ProSiteProfiles | Protein kinase domain profile. | 99 | 390 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g2524 | Lac-Chr2:37658038 | Lac5g2385 | Lac-Chr5:42576233 | 1.90E-17 | dispersed | |
| Lac5g2385 | Lac-Chr5:42576233 | Lac9g2254 | Lac-Chr9:41888913 | 7.10E-205 | dispersed | |
| Lac8g1562 | Lac-Chr8:33291064 | Lac5g2385 | Lac-Chr5:42576233 | 1.70E-06 | dispersed | |
| Lac5g2385 | Lac-Chr5:42576233 | Lac12g0862 | Lac-Chr12:8924073 | 7.60E-207 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86214 | PF00069 | Pkinase | 3.70E-65 | CL0016 | Lac | PK |
Pathway information