Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2388 ATGGTCTTCCATTTGAAGAAAATTGAGATTTCAACTATTCCAAACGTTCGCTTGTACTCATACGAAGAACTTAGAAAAGCAACTGAAAATTTCAGGTTCGAAAATAAACTTGGACAGGGAGGCTTTGGATCCGTCTACAAGGGAAGGCTCAGAAATGGAACTCTGGCTGCCATAAAGGTACTATCCGTGGACTCAAGCCAAGGGACACGGGAGTTTTTGGCAGAAATCAATGTGATTTCAGTTATAGAACATGATAACCTGGTTAAGTTGCATGGTTGTTGTGTGGAAGGGCAGCATCGGATCTTGGTCTATCCTTACCTGGAAAATAGTAGCCTTGACAGAATGCTTTTTGGTAGAGGACATGGGAATATCCAATTCAATTGGCAAACGAGGTGTAAAATATGCATTGGCATTGCACAGGGGCTCACGTTCCTTCATGAGGAAGTCCAGCCACATGTTATACACAGGGACATCAAAGCAAGCAATATCCTGCTTGATAAGGACTTAACCCCAAAAATTTCTGATTTTGGTCTTGCTAGACTACTCCCTGCTCACATGACCCATGTCAGTACACGTATTGCTGGGACAGAAGGTTATCTTGCACCTGAATATGCCATACAGGGGCAAGCAACAAGAAGAACAGATATCTATAGTTTTGGTGTCTTACTCTTGGAGATTGTTTGTGGAAGGTACAACATAAATAGACGGTTGCCTGCTGAAGAACCATATCTTCTAGAAATGGTGTGGGAGCATCATGAGAAAGGGCAATTGCTGGAATTGGTAGACATATCATTACGTGGAGACTTTGAGGCTGAGGAGGCCTGCAGATATTTAAAAGTTGGTCTTCTCTGCACTCAAGATATGCCAAAACTCCGGCCATCTATGTCGACCGTTGTCAAGATGCTAACAGGTGAGATTGATATATCTGATCAAACAATATCCAGACCAGGAATGCTTTCAGAGTTCATGCTTCGAAAAGATGTACTAGGCAGGAAAGGCGAGTCCGATTTGAAGCTTGCATCAACAACTGAAGACTCAGGAAAGCCAACAGATTCAACTTCATCGTCAGGATTCATGGACACCTCATATGCTACGATAACCTTCAATTCGATATTTGATCGTAGTAACTGA 1131 42.53 MVFHLKKIEISTIPNVRLYSYEELRKATENFRFENKLGQGGFGSVYKGRLRNGTLAAIKVLSVDSSQGTREFLAEINVISVIEHDNLVKLHGCCVEGQHRILVYPYLENSSLDRMLFGRGHGNIQFNWQTRCKICIGIAQGLTFLHEEVQPHVIHRDIKASNILLDKDLTPKISDFGLARLLPAHMTHVSTRIAGTEGYLAPEYAIQGQATRRTDIYSFGVLLLEIVCGRYNINRRLPAEEPYLLEMVWEHHEKGQLLELVDISLRGDFEAEEACRYLKVGLLCTQDMPKLRPSMSTVVKMLTGEIDISDQTISRPGMLSEFMLRKDVLGRKGESDLKLASTTEDSGKPTDSTSSSGFMDTSYATITFNSIFDRSN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42607209 42611941 - Lag0019472.1 Lac5g2388 609030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2388 376 FunFam Putative LRR receptor-like serine/threonine-protein kinase 107 314 - -
Lac5g2388 376 SMART serkin_6 31 302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2388 376 MobiDBLite consensus disorder prediction 337 356 - -
Lac5g2388 376 ProSitePatterns Protein kinases ATP-binding region signature. 37 59 IPR017441 GO:0005524(InterPro)
Lac5g2388 376 FunFam cold-responsive protein kinase 1 4 106 - -
Lac5g2388 376 Gene3D Phosphorylase Kinase; domain 1 4 106 - -
Lac5g2388 376 Pfam Protein tyrosine and serine/threonine kinase 32 302 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2388 376 CDD STKc_IRAK 37 304 - -
Lac5g2388 376 SUPERFAMILY Protein kinase-like (PK-like) 11 302 IPR011009 -
Lac5g2388 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2388 376 ProSiteProfiles Protein kinase domain profile. 31 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2388 376 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 15 329 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Lac5g2388 376 Gene3D Transferase(Phosphotransferase) domain 1 107 314 - -
Lac5g2388 376 MobiDBLite consensus disorder prediction 342 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2349 Lac-Chr5:42133937 Lac5g2388 Lac-Chr5:42607209 5.50E-135 dispersed
Lac5g2388 Lac-Chr5:42607209 Lac5g2414 Lac-Chr5:42790269 7.30E-89 dispersed
Lac5g2388 Lac-Chr5:42607209 Lac12g0842 Lac-Chr12:8764084 2.20E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86215 PF00069 Pkinase 8.40E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2388 - - - 0.0