Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2398 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAGGTTTTCCTCCAAGTCGTCGTGTAGAGATCCGAATGGTCTCGGAGGAGGAGCAGGACTTCTTCGAGTTCCTTCCTCGGACCTCGACGATCCCTCCGCTCTTCCCGGCGGGACTGGCGGTGACCGGATTGAGGCTGAATCCGCTTGGTCCTCCATGCTCCCCGAGCTTCTCCGGGAGATCATTCAGCGGGTCGAGGCTTCTGAGGACACTTGGCCCAACCGCCACAACGTCGTTTCCTGTGCTTGCGTCTGTAAGCGTTGGCGAGACATTACTAAGGAGATCGTCAAGGCTGCCTCTCATTCCGGGAAAATCACTTTCCCTTCTTGCCTCAAGCAGCCTGGACCAAGCGATAATCCACATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTACCTTTATCTTGCCCTTACCCCATCATTTACAGATAAGGGCAAATTCCTCTTAGCTGCTCGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGACGCTGAAGACTTATCCCAAGGAAGCAATGCGTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACTAATTTTACAATTTACGATAGCCAACCACCACATAATGGAGCAAAGCCATCAAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTTTCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCCTACAAATTTAATCTTTTGAAATCAAGAGGCCCGAGGAGAATGATATGCTCTCTAAAGTGCCCACTATCAGAAGACACTGGCACCAGCAAACCTTGTGAGAACTCGAAGATGAAGAAATCCGAGTCCTTTTCATCTTCATCTGGGTTGACAATCTTAAGAAACAAGGCTCCTAGGTGGCACGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGCCGGGTGACAGTAGCATCGGTTAAAAACTTTCAACTTGTCGCTACTGTTGATCATAGCCAGCCGGGAGGCAAAGGGGACGAAGAAACAGTCCTCCTACAGTTTGGAAAGGTAGGCGACGATACCTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGTTGGCGTGCGAGTAG 1167 48.67 MSLRRSFLSRRFSSKSSCRDPNGLGGGAGLLRVPSSDLDDPSALPGGTGGDRIEAESAWSSMLPELLREIIQRVEASEDTWPNRHNVVSCACVCKRWRDITKEIVKAASHSGKITFPSCLKQPGPSDNPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPLSEDTGTSKPCENSKMKKSESFSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDHSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42678189 42681929 + Lag0019482.1 Lac5g2398 609040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2398 388 PANTHER TUBBY-RELATED 52 387 - -
Lac5g2398 388 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Lac5g2398 388 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Lac5g2398 388 PRINTS Tubby superfamily signature 366 388 IPR000007 -
Lac5g2398 388 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Lac5g2398 388 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Lac5g2398 388 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Lac5g2398 388 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Lac5g2398 388 PRINTS Tubby superfamily signature 345 364 IPR000007 -
Lac5g2398 388 CDD F-box_AtTLP-like 59 103 - -
Lac5g2398 388 Pfam Tub family 120 383 IPR000007 -
Lac5g2398 388 MobiDBLite consensus disorder prediction 208 228 - -
Lac5g2398 388 Gene3D Tubby Protein; Chain A 115 388 IPR025659 -
Lac5g2398 388 Pfam F-box domain 59 102 IPR001810 GO:0005515(InterPro)
Lac5g2398 388 MobiDBLite consensus disorder prediction 13 51 - -
Lac5g2398 388 SUPERFAMILY Tubby C-terminal domain-like 109 388 IPR025659 -
Lac5g2398 388 ProSitePatterns Tub family signature 2. 373 388 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2724 Lac-Chr4:46178476 Lac5g2398 Lac-Chr5:42678189 6.80E-11 dispersed
Lac5g2398 Lac-Chr5:42678189 Lac8g1678 Lac-Chr8:34901823 2.00E-102 dispersed
Lac5g2398 Lac-Chr5:42678189 Lac12g2379 Lac-Chr12:40902928 1.40E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23896 PF01167 Tub 9.20E-104 CL0395 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2398 K19600 - csv:101211968 649.818