Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2412 ATGACGTCGGGGACGAGGCTACCGACATGGAGGGAGCGGGAGAACAACAAGAGAAGAGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTTCTGGACTAAGGATGTATGGCAACTACAAGCTTCCCAAGCATTGCGACAACAACGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTCGAACCTGATGGCACCACTTATCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTATGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGTCCCGGCTCATCCTCTTTTCCAAGTCCAGCATCATCCTCATATGTTGCTAATCCGAATGCTGATGGCAGTTCACTCATCCCATGGCTTAAAAACCTGTCATCTTCATCATCTTCAGCATCCTCGTCCAAACTCCCCAATCTCTACATTCATGGAGGTTCCATCAGTGCTCCTGTCACACCTCCTCTGAGTTCCCCAACTGCCAGAACACCCCGACTCAAAGCCGACTGGGAGGAACAGACCATCCTGCCGGGATGGAGTGCCCAATACTATTCCTCCCTGCCATCTTCTACTCCACCAAGTCCCGGGCGTCAGATTGTTCCCAATCCAGAATGGTTTGCTGGCCTTAGGATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTGGTTTCTACTAACCCATTTGGTTTCAAGGAAGCAGCAACAAATGGTGGAGGCTCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCAGCAGGCTCCGATCACACTGCTGATATTCCAATGTCAGAAGTGATCTCTGATGAGTTCGCATTTGGAAGCAATGCAGCAGGAATTGTGAAACCATGGGAAGGAGAACGAATTCATGAAGAATGTGGTTCAGACGACCTAGAGCTGACTCTTGGGAACTCAAGGACCAGGTAA 978 50.61 MTSGTRLPTWRERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPGSSSFPSPASSSYVANPNADGSSLIPWLKNLSSSSSSASSSKLPNLYIHGGSISAPVTPPLSSPTARTPRLKADWEEQTILPGWSAQYYSSLPSSTPPSPGRQIVPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAATNGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKPWEGERIHEECGSDDLELTLGNSRTR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42779044 42781730 + Lag0019496.1 Lac5g2412 609054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2412 325 MobiDBLite consensus disorder prediction 88 120 - -
Lac5g2412 325 MobiDBLite consensus disorder prediction 91 120 - -
Lac5g2412 325 MobiDBLite consensus disorder prediction 1 20 - -
Lac5g2412 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lac5g2412 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 139 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0987 Lac-Chr10:7931396 Lac5g2412 Lac-Chr5:42779044 4.80E-121 dispersed
Lac5g2412 Lac-Chr5:42779044 Lac6g0390 Lac-Chr6:3198662 3.50E-47 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23897 PF05687 BES1_N 1.10E-65 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2412 - - - 0.0