Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2414 ATGGCTTTTCGAAGTTCTCTATTCAGGATCCTCGGCGTTCTTCTCTTGTGGATTTTGCTGTTCCATGGATTTGGATCCGACGCTCAGCTTTTGCCAGAAACCGAAGTGAAAAACCTTCAAACAATATCTTCAAAACTAAAGAATTTAAACTGGAATGTTACGCGGAGTTCTTGCATTCAAGGTGAAGGCTTTTCCAATAGAGCTATTCAGGGAAACCAAATCTTGAGGAATGTCTCATGCAACTGTACTTCCACTGTTTGTCATGTGACAATCATCCTGCTTAAGGGTCTCAATCTAACAGGAACTTTTCCAGCTGAATTTGGTAATCTTACTCATCTGCAGGAACTTGATCTTACTCGCAACCATATTAATGGCCAACTACCCGCTAGTCTTGCCAATGTTCCTCTTGTCAAACTTTCTCTCTTGGGAAACAGGCTAAGCGGTTCAATTCCCAAGGAAATAGGTGACATTGCCACCCTTGAAGAGCTGGTCGTGGAAGACAACCAGCTAACTGGAAATCTACCTCCCAGCCTTGGGAATCTGAACCGTTTGAATAGACTGCTTCTGTCTGCAAACAATTTCACAGGAAAAATACCAGATTCATTTGGAAAATTAAAGAGCTTGGTTGATTTTAGGATAGATGGGAATGGACTGTCGGGGAAGATTCCGGAATTCATTGGGAATTGGATCAACCTTGAGAGACTGGATATTCAAGGAACATCGATGGAAAACCCCATTCCTTCTACAATATCTCAATTGAAGAACCTAACTGAATTGAGGATATCTGATTTGAAGGGATCATTTATAAGTTTCCCAAATCTGACGGATATGATAAATATGGAAGAATTGGTCCTTAGGAACTGTTTAATAAATGGTTCAATTCCTGAGTATATTGGAGAAATGAATAAATTATCAACTCTAGATCTAAGCTTCAACCAGTTAACTGGTCCAATTCCTGAGACATTTCAGAATCTGATAAAGAAAAAGATAGACTTCATGTTTCTGACAAACAACTCACTGAGTGGTGAAGTGCCAGGTTGGATCTTGAGGAGCAAAAAGAACATAGATTTGTCTTACAACAATTTTACAGGGTCTACTCTTGCTAGTTGCCAACAATCACCTGTGAACTTGGTTGCCAGTTACCCACCTGCAGCAAATCATCAAGTTCCTTGGTGCCTCAAGAAGGACCTTCCATGCCCTGGAAAAGCTGAACATCATTCCTTGTTTATTAATTGCGGTGGAACCAGATCGAGGGCTGATGGGCATGATTATGAAGAGGACTTAACTACAGAAGGCAAGTCAAACTTCTTTTCTATTTCAGAAAAATGGGCTTATAGCAGTACAGGAGTTTTTTTGGGTGATGAAAGTGCTGACTACTTAGCTACAAATAAGTTTGGCCTGAATGTTAGTGGTCCGCGCTATTATCAAAGTGCCCGACTTTCCCCTATCTCCCTCAAATATTATGGTCTTTGCCTGATGAGCGGAAGCTACAATGTGAAGCTCCACTTTGCTGAAATTATGTACTCTAATGATCAAACTTTTAGCAGCCTGGGAAAGCGTATATTCGATATATCAATTCAAGGAAAACTAGTTAAGAAGGATTTCAACATTGTGGAGGCAGCTGGGGGTGTTGGTAAGAACTTCACAGTGGAAGATAGAAATGTTCTTGTTAATGGCAGTACCCTTGAGATTCATCTATATTGGGCTGGTAAAGGAACCACAGCTGTGCCAGACAGAGGAGTTTATGGACCCCTTATTTCTGCTATCACAGTTACACCGAATTTTGAAATCGACGAAGGAGGACTATCAGCTGGAGCACTGGCCGGCATCATAATTTCTTCATGTGCAGTAGTTATCGTGTTGATCATCGTATTTCTTTGGATGAAAGGTTACATATGTAAGAAGGAAGTCCTAGATAATGAACTTTCCGGCGTAGATTTACAAACAGGTCATTTTACCTTGAAACAAATCAAAGCTGCCACCAACAACTTTGATCCTAAAAGTAAAATAGGCGAGGGTGGATTTGGGCCTGTCTACAAGGGTGTACTGTCAGATGGTGCTTTGATTGCCGTGAAGCAACTCTCCTCAAAATCGAAGCAAGGGAGCCGTGAGTTTGTCACTGAGATTGGCATGATATCTGCATTGCAACACCCAAATCTCGTTAAGCTCTATGGCTGCTGTGTTGAGGGAAACCAATTGTTGCTTGTATATGAATACATGGAAAACAATAGTCTTGCCCGTGCACTTTTTGGTCGAGAGGAACAGAGACTACACCTTGACTGGCGAACAAGGAAGAAGATATGCTTGGAGATAGCTAGGGGATTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATTGTTCATAGAGACATAAAGGCTACAAATGTGCTGCTCGATAAAGATCTTAATGCCAAAATTTCTGACTTTGGTTTGGCTAAGCTTGATGAAGAGGAGAACACCCACATAAGCACACGAATTGCTGGAACCATCGGTTACATGGCACCTGAGTATGCAATGAGAGGATACTTGACTGATAAGGCAGATGTTTACAGCTTTGGAGTTGTTGCCTTAGAGATAGTTAGTGGGAAAAGTAACACAAATTACAGGCCAAAGGAAGAGTTCGTTTATCTTCTTGATTGGGCCTATGTGCTGGAAGAGCAGGGAAACCTTCTCGAACTGGTTGATCCAGACCTTGGTTCAAAGTACTCATCAGAGGAAGCAATGAGGATGCTGAACATAGCTCTCTTATGCACCAACCCATCTCCCACACTCAGACCAGCCATGTCTTCTGTGGTGAGCATGCTAGAAGGTAAGATTGCAGTCCAGGCACCGATCATCAAGCGCACTTCGTCGGGCCAAGATCCGAGGTTTAAAGCGTTCGAGAAGCTCTCACATGACAGCAGATCACAGATTTCAAGCTCAACTCTTTCGGAAGATGTTGAGGCTCAGAAAAGCATATTAATGGACGGACCATGTACTGATTCCTCAGTATCCATTGACAACAATGGCAATAATCTCTACCATTCTGCATCGAGTGACCCCCTCGAAAATCGTCGTCGTGTTGATGATATGAAACCGTCAGCTAAGTAG 3090 42.1 MAFRSSLFRILGVLLLWILLFHGFGSDAQLLPETEVKNLQTISSKLKNLNWNVTRSSCIQGEGFSNRAIQGNQILRNVSCNCTSTVCHVTIILLKGLNLTGTFPAEFGNLTHLQELDLTRNHINGQLPASLANVPLVKLSLLGNRLSGSIPKEIGDIATLEELVVEDNQLTGNLPPSLGNLNRLNRLLLSANNFTGKIPDSFGKLKSLVDFRIDGNGLSGKIPEFIGNWINLERLDIQGTSMENPIPSTISQLKNLTELRISDLKGSFISFPNLTDMINMEELVLRNCLINGSIPEYIGEMNKLSTLDLSFNQLTGPIPETFQNLIKKKIDFMFLTNNSLSGEVPGWILRSKKNIDLSYNNFTGSTLASCQQSPVNLVASYPPAANHQVPWCLKKDLPCPGKAEHHSLFINCGGTRSRADGHDYEEDLTTEGKSNFFSISEKWAYSSTGVFLGDESADYLATNKFGLNVSGPRYYQSARLSPISLKYYGLCLMSGSYNVKLHFAEIMYSNDQTFSSLGKRIFDISIQGKLVKKDFNIVEAAGGVGKNFTVEDRNVLVNGSTLEIHLYWAGKGTTAVPDRGVYGPLISAITVTPNFEIDEGGLSAGALAGIIISSCAVVIVLIIVFLWMKGYICKKEVLDNELSGVDLQTGHFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCVEGNQLLLVYEYMENNSLARALFGREEQRLHLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELVDPDLGSKYSSEEAMRMLNIALLCTNPSPTLRPAMSSVVSMLEGKIAVQAPIIKRTSSGQDPRFKAFEKLSHDSRSQISSSTLSEDVEAQKSILMDGPCTDSSVSIDNNGNNLYHSASSDPLENRRRVDDMKPSAK 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42790269 42802560 - Lag0019498.1 Lac5g2414 609056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2414 1029 Gene3D Phosphorylase Kinase; domain 1 631 739 - -
Lac5g2414 1029 Gene3D Ribonuclease Inhibitor 36 161 IPR032675 -
Lac5g2414 1029 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 961 IPR051824 -
Lac5g2414 1029 MobiDBLite consensus disorder prediction 1013 1029 - -
Lac5g2414 1029 Gene3D Ribonuclease Inhibitor 163 266 IPR032675 -
Lac5g2414 1029 ProSiteProfiles Protein kinase domain profile. 664 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2414 1029 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 35 197 - -
Lac5g2414 1029 MobiDBLite consensus disorder prediction 989 1029 - -
Lac5g2414 1029 Gene3D - 403 594 - -
Lac5g2414 1029 SMART serkin_6 664 933 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2414 1029 Pfam Malectin domain 408 589 IPR021720 -
Lac5g2414 1029 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 594 - -
Lac5g2414 1029 Pfam Protein tyrosine and serine/threonine kinase 667 933 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2414 1029 SUPERFAMILY Protein kinase-like (PK-like) 647 946 IPR011009 -
Lac5g2414 1029 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Lac5g2414 1029 SUPERFAMILY L domain-like 75 325 - -
Lac5g2414 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2414 1029 Gene3D Ribonuclease Inhibitor 267 376 IPR032675 -
Lac5g2414 1029 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Lac5g2414 1029 Gene3D Transferase(Phosphotransferase) domain 1 740 947 - -
Lac5g2414 1029 CDD STKc_IRAK 670 937 - -
Lac5g2414 1029 MobiDBLite consensus disorder prediction 989 1012 - -
Lac5g2414 1029 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
Lac5g2414 1029 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 272 366 - -
Lac5g2414 1029 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Lac5g2414 1029 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515(InterPro)
Lac5g2414 1029 Pfam Leucine Rich Repeat 160 181 IPR001611 GO:0005515(InterPro)
Lac5g2414 1029 Pfam Leucine Rich Repeat 184 205 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1155 Lac-Chr2:9229236 Lac5g2414 Lac-Chr5:42790269 3.30E-168 dispersed
Lac2g1158 Lac-Chr2:9264824 Lac5g2414 Lac-Chr5:42790269 3.60E-207 dispersed
Lac2g1159 Lac-Chr2:9315876 Lac5g2414 Lac-Chr5:42790269 0.00E+00 dispersed
Lac2g1168 Lac-Chr2:9403285 Lac5g2414 Lac-Chr5:42790269 2.10E-242 dispersed
Lac2g1169 Lac-Chr2:9411233 Lac5g2414 Lac-Chr5:42790269 1.20E-13 dispersed
Lac2g1171 Lac-Chr2:9419998 Lac5g2414 Lac-Chr5:42790269 8.60E-260 dispersed
Lac3g0373 Lac-Chr3:2804742 Lac5g2414 Lac-Chr5:42790269 4.40E-84 dispersed
Lac5g1090 Lac-Chr5:18037420 Lac5g2414 Lac-Chr5:42790269 2.10E-103 dispersed
Lac5g2388 Lac-Chr5:42607209 Lac5g2414 Lac-Chr5:42790269 7.30E-89 dispersed
Lac5g2414 Lac-Chr5:42790269 Lac10g0793 Lac-Chr10:6237608 6.50E-79 dispersed
Lac5g2414 Lac-Chr5:42790269 Lac12g0842 Lac-Chr12:8764084 8.40E-220 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86216 PF07714 PK_Tyr_Ser-Thr 1.30E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2414 - - - 0.0