Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2421 ATGAAGATTCAGTGCAATGTCTGCGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCCGATGAGGCGGCGCTGTGCTGGGCTTGCGACGAGAAGATTCATGCGGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAAATGCGACATCTGTCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATTCTTATGTAACTGGTCATCAGCGCTTTCTGCTCACTGGTGTGAAAGTGGCACTTGAGCCAACTGACCCTGTTGCTTGTTCTTCTATGGCTAAGTCACATTCGAGAGAGAAACCTACCGAGACAAAAGTTAAACCGTTGTCTGAAAGGGAATTATCGATGCCTTCTCCTGGTGAACTCAGCAGAAGCCTGTCTATACAAGGTGGATCTGAGGACTTCATGACAGATAGAACATTGCTTACCGGAGATTCTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGAGTTTATGGATAATGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCACCAATTTTGAGAGCTGGTGACGTTGAACTGGACGACGACGATGAGTGCTCAGGTCACGTTCCAGAGGCTTCCTGGACTGTGCCTCAGGTTCCCTCCCCACCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAACGGTACATTCTCGAAACGAAGGAGGCAGTTCTAG 891 46.91 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANSYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKPTETKVKPLSERELSMPSPGELSRSLSIQGGSEDFMTDRTLLTGDSVSGGFSQWQMDELINLTGFNQNYEFMDNGSSKADSGKLGDSDSSPILRAGDVELDDDDECSGHVPEASWTVPQVPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42833531 42835743 - Lag0019505.1 Lac5g2421 609063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2421 296 CDD Bbox1_BBX-like 56 99 IPR049808 -
Lac5g2421 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 278 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lac5g2421 296 Gene3D Classic Zinc Finger 1 92 - -
Lac5g2421 296 FunFam B-box zinc finger protein 22 1 93 - -
Lac5g2421 296 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lac5g2421 296 MobiDBLite consensus disorder prediction 115 150 - -
Lac5g2421 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 MobiDBLite consensus disorder prediction 121 135 - -
Lac5g2421 296 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Lac5g2421 296 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2421 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1427 Lac-Chr4:32701744 Lac5g2421 Lac-Chr5:42833531 7.80E-30 dispersed
Lac4g1778 Lac-Chr4:36729827 Lac5g2421 Lac-Chr5:42833531 1.10E-34 dispersed
Lac5g2421 Lac-Chr5:42833531 Lac6g0470 Lac-Chr6:3872291 6.10E-30 dispersed
Lac5g2421 Lac-Chr5:42833531 Lac9g1735 Lac-Chr9:36988123 3.60E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0015 . 141 518 Orphan Transcription Factor Family AT5G61850 69.3 4.2e-125 445.7
Lac4g1778 . 1 167 Orphan Transcription Factor Family AT1G06040 69.0 4.0e-61 231.9
Lac5g2421 . 1 109 Orphan Transcription Factor Family AT1G06040 68.8 7.3e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23898 PF00643 zf-B_box 3.40E-07 No_clan Lac TF