Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2434 ATGAGTCCAGCAAATTGTTTTTGGACAATATTCAAGCAACGGAAGGTGAAACATGTTACAAGCAATGGGGAACAGGTACATGTAGAGACAGGAAAATCCAATGGTTCCTTAAATGTAAAGAGTGAAGATCTAGCTGCGACTCGAATTCAAAATGCATTTCGAGCATTTGCGGCCAGAAAGGTTGTACATAATTCGAAAGGGCCAGAGAGATGTCAGGATCTAATTCAAGGTGAAATGGCTACAAAACAGGTGTTGAGCTTCATTCATTCATGGAGCAAAATGCAGCAAGAAATTAGAGCACGTAGACTCTGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCAGAAGCTTGAGGCTAAGATTCATGAACTTGAGGTAGAATGGTGCGGTGGGTCTGAAACAAAAGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTTAAACGGGAGCGAGCCATGGCTTATGCATTCTCTCATCAGTGGAGGGCCAACTCCATCTTAGATCTAAGTCCGGCTTCATACAGCCTTGACAAAGAAAACTGGGGATGGAGTTGGAAGGAGAGATGGATTGCTGCTCGGCCATGGGAGATCCGAGCTAATACTCATCCCACCATCCCAAAGAAGGTGCAGACGAAGCAAACAAGCAAACTCAATAAAGTCACGACACATCAACCGACATTGAAGGTCTCGAACTCAGCTAGACTTTCTTCGTCAAACAGTAAGGGGAGTTCAAAGGCCAGAAACTCTGCTATACCCAACTACTGA 789 43.85 MSPANCFWTIFKQRKVKHVTSNGEQVHVETGKSNGSLNVKSEDLAATRIQNAFRAFAARKVVHNSKGPERCQDLIQGEMATKQVLSFIHSWSKMQQEIRARRLCMVTEYRVKQKKLENQQKLEAKIHELEVEWCGGSETKEEILFKIQQREEAAVKRERAMAYAFSHQWRANSILDLSPASYSLDKENWGWSWKERWIAARPWEIRANTHPTIPKKVQTKQTSKLNKVTTHQPTLKVSNSARLSSSNSKGSSKARNSAIPNY 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42959095 42967481 - Lag0019518.1 Lac5g2434 609076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2434 262 ProSiteProfiles IQ motif profile. 42 70 - -
Lac5g2434 262 MobiDBLite consensus disorder prediction 217 262 - -
Lac5g2434 262 Coils Coil 112 132 - -
Lac5g2434 262 PANTHER IQ-DOMAIN 5-RELATED 29 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2434 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3383 Lac-Chr1:53405612 Lac5g2434 Lac-Chr5:42959095 4.50E-57 dispersed
Lac5g2434 Lac-Chr5:42959095 Lac8g2437 Lac-Chr8:42431493 5.50E-27 dispersed
Lac5g2434 Lac-Chr5:42959095 Lac3g1549 Lac-Chr3:14563680 1.90E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2437 . 1 479 IQD Protein Family AT3G52290 54.6 1.4e-104 377.5
Lac3g1549 . 319 712 IQD Protein Family AT3G22190 58.3 1.4e-93 340.9
Lac2g0466 . 1 437 IQD Protein Family AT2G26180 59.5 7.0e-117 418.3
Lac1g3383 . 77 355 IQD Protein Family AT2G33990 52.3 1.5e-64 243.8
Lac5g2434 . 36 223 IQD Protein Family AT2G33990 57.1 1.7e-52 203.8
Lac5g2434 . 21 230 IQD Protein Family AT3G15050 56.6 2.8e-55 213.0
Lac8g2087 . 128 472 IQD Protein Family AT5G13460 52.4 4.2e-75 279.6
Lac7g0055 . 1 506 IQD Protein Family AT4G00820 55.1 3.9e-128 456.1
Lac12g1344 . 98 501 IQD Protein Family AT4G00820 56.8 1.0e-104 378.3
Lac7g0055 . 1 506 IQD Protein Family AT1G01110 52.4 4.4e-124 442.6
Lac12g1344 . 98 501 IQD Protein Family AT1G01110 53.0 3.4e-100 363.2
Lac4g2932 . 1 395 IQD Protein Family AT3G16490 52.3 1.0e-72 271.6
Lac3g0966 . 1 395 IQD Protein Family AT3G16490 51.8 8.7e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30