Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2461 ATGGGTTGCGTTTGTTGTAAGCCCTCTGCTATAGAAGATAGCAAGGAAAGTCCAAGGGAGAGGTTGTCAAGTAAGACCTCGTCTGACCTGCGGGTGGCAAGAGTGACTTCATCATCGAGGGAAGAAGCTTATCGATCTAAAGATCAGCATGATGGTAATGATGCAAGAGTGATGTTGATTGACAAGCAGGTGAATGGGTCGGGTCGACTGCAGGGTGAGAATTTTGACAGGAAGAGGGAGAAGATGGAGGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCGACAGAAGGGGACCACGTTGCTGCAGGATGGCCGCCGTGGTTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGGTGGCTACCCCGACGTGCTGATTCTTTTGAGAAATTAGATAAAATTGGCCAAGGGACTTATAGTAATGTATATAGGGCCCGTGATCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGATAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTGATAAAGCTGGAGGGTCTAGTTACGTCAAGGATGTCTTGCAGCCTCTATCTTGTTTTTGAGTACATGGAGCATGACTTAGCAGGACTAGCTTCACACCCTGGCGTGAAGTTTACAGAGGCGCAGGTCAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATAATGGCATCTTGAAAATTGCAGACTTTGGTCTAGCAAGTTTTTTTGATATCCATCAAAATCAGCCACTAACAAGCCGGGTTGTAACTCTTTGGTATCGGCCGCCTGAGCTTTTACTTGGCGCCACTTATTATGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTAGCTGAATTGTATGCTGGGAAACCCATTATGCCGGGAAGAACGGAGGTGGAACAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCAACTATATTTAAGCCCCAACAGCCATATAGACGCTGTGTTGCAGAAACATTTAAGGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGACATTACTCTCAATAGATCCTGCTGATCGTGGCTCTGCTGCTCTTGCCCTTAAAAGCGAGTTTTTCTCAACAAAGCCACTTCCATGTGATCCTTCAAGTTTGCCAAAGTATCCTCCGAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGACTTGACCTGCAGAGGAAAGATAGAGAATCTCGAGCCGTCCCTGCACCTGATGCCAATGCTGAGTTAGCCTCATCAATGCAGAAAAGACAAGGCCAGTCCAATTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCGCCTCGACCTTCACAAGGAGTGGAAAGAATGGATTCTCAGGTGCGTCATCCAAAGAAAGCCTCACATTCAGGACCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCTAGTAAGAACCCAGATGACGCTCCCAAAATCTCAACTGGGGCTGAAAATTTCACCACTTCAGGACTAGTAGCAGCTAGAAGAAGTATGCTGGCTGAAGATTCCAGGGAAAAGTCTGACTCTTCACATGGAGAGGTTCAAAAACTAATTGGCAGGTTTCCTGGGTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCAGATCAGAAGTTCTCAAATCACAGTATTGTAGGCTCGCACGACAAAGAGAGGAGCAGCACCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAGGGTCATAAGATCCATTACTCTGGTCCATTACTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCACGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTACGAAAGGTTCAAGCTGACGGGAAACAGATGTCAACGAATTCGTTATTCGTCTCCGGTCGTTAA 2115 46.15 MGCVCCKPSAIEDSKESPRERLSSKTSSDLRVARVTSSSREEAYRSKDQHDGNDARVMLIDKQVNGSGRLQGENFDRKREKMEAQHPSMGRIPKATEGDHVAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVAETFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQGQSNSKSRSEKFNPHPEEASGFPIDPPRPSQGVERMDSQVRHPKKASHSGPLAQRAAWAKASKNPDDAPKISTGAENFTTSGLVAARRSMLAEDSREKSDSSHGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERSSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQADGKQMSTNSLFVSGR 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43197045 43203183 - Lag0019545.1 Lac5g2461 609103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2461 704 MobiDBLite consensus disorder prediction 35 54 - -
Lac5g2461 704 PANTHER CELL DIVISION PROTEIN KINASE 127 412 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac5g2461 704 FunFam probable serine/threonine-protein kinase At1g54610 115 210 - -
Lac5g2461 704 Gene3D Transferase(Phosphotransferase) domain 1 211 451 - -
Lac5g2461 704 MobiDBLite consensus disorder prediction 441 468 - -
Lac5g2461 704 MobiDBLite consensus disorder prediction 1 54 - -
Lac5g2461 704 SMART serkin_6 128 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2461 704 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
Lac5g2461 704 Pfam Protein kinase domain 128 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2461 704 CDD STKc_CDK9_like 128 412 - -
Lac5g2461 704 MobiDBLite consensus disorder prediction 681 704 - -
Lac5g2461 704 ProSiteProfiles Protein kinase domain profile. 128 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2461 704 MobiDBLite consensus disorder prediction 690 704 - -
Lac5g2461 704 MobiDBLite consensus disorder prediction 441 560 - -
Lac5g2461 704 FunFam probable serine/threonine-protein kinase At1g54610 211 452 - -
Lac5g2461 704 MobiDBLite consensus disorder prediction 12 27 - -
Lac5g2461 704 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524(InterPro)
Lac5g2461 704 SUPERFAMILY Protein kinase-like (PK-like) 122 420 IPR011009 -
Lac5g2461 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2461 704 MobiDBLite consensus disorder prediction 477 493 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g3025 Lac-Chr2:47923657 Lac5g2461 Lac-Chr5:43197045 1.60E-181 dispersed
Lac3g2293 Lac-Chr3:31237655 Lac5g2461 Lac-Chr5:43197045 1.80E-171 dispersed
Lac5g2461 Lac-Chr5:43197045 Lac7g0838 Lac-Chr7:6765851 1.10E-181 dispersed
Lac5g2461 Lac-Chr5:43197045 Lac9g2169 Lac-Chr9:41161338 9.80E-204 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86218 PF00069 Pkinase 1.00E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2461 - - - 0.0