Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2479 ATGCAGATTCAACAGTCCGATGCTCTGCTGGGAGGCGTGGCTTCCTACAGCTCCACTGCCATTGTTCCTCATCTTCGTCGACTTAGTTCCACCAGGAGCGGAAGTGTGGTGACCAGCTATCTTTTGGATGATAATGACGTAGAGGATCTGGAGATGTTGCTTGAGGCATATTTTATGCAGTTGGATGGGACTCGTAACAGAATATTATCGGTTAGGGAATACATAGATGACACCGAGGATTACGTCAATATACAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCGAGTTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGACGGGATATTCGGGTACTTTGTCGGAGGTACTTCAGCAGGTTGTTTGTTGATTTTCCTGCTTATTTTCGGGTATGCAAGATGGAAGAAGCTTCTTGGTTCATGA 489 44.17 MQIQQSDALLGGVASYSSTAIVPHLRRLSSTRSGSVVTSYLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIASLFGMNIPCTLYETDGIFGYFVGGTSAGCLLIFLLIFGYARWKKLLGS 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43360329 43361763 - Lag0019563.1 Lac5g2479 609121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2479 162 Gene3D Magnesium transport protein CorA, transmembrane region 100 160 - -
Lac5g2479 162 Pfam CorA-like Mg2+ transporter protein 37 153 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Lac5g2479 162 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 32 159 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lac5g2479 162 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 98 149 IPR045863 -
Lac5g2479 162 Gene3D Magnesium transport protein CorA, transmembrane region 16 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2650 Lac-Chr11:42485541 Lac5g2479 Lac-Chr5:43360329 3.60E-30 dispersed
Lac5g2479 Lac-Chr5:43360329 Lac6g0802 Lac-Chr6:6877473 4.10E-20 dispersed
Lac5g2479 Lac-Chr5:43360329 Lac12g2225 Lac-Chr12:39424886 3.00E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2479 K16075 - csv:101203496 285.034