Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2482 ATGGCTTCTCGTTTCTGGACCCAGGGTGGTGGGAGTGGTAGTGATTCTGAAGCGGAGGAGAGTGACTATGATGAAGAGATTGACGACTTACCGACTGATCCTAGCTCCCAACCGAATAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGTGACGATTCTGATAAAGATAAACGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACTGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTAAGCCTGCAGGAGAGTTTTGATAAGATAAATAAACAGCTTGAGAAAGTCATGCGTGTTACCGAGTCTGAGAAGGTGCCAACTCTTTATATTAAAGCACTTGTGATGCTAGAGGACTTCCTGAATCAAGCCATGGCTAATAAGGAAGCCAAGAAGAAAATGAGTACTAGCAATGCTAAGGCCTTGAATTCAATGAAACAGAAGCTAAAAAAGAACAATAAGCAATATGAAGAGTTAATTACCAAGTGTAGGGAGAATCCTGAGGTTGAGGAAGAAAAGGATGAAGAGTTGGAGTCGGAGGAGGATGATGATGACGATTCTGAGATTGAGGAGGATCCTTCTAAAATCATGTCAGGATCAGAAGATGAGGATGAGGAAGAAGCCCAAGAGGATGGGCCTGGGCCCGGTGGTAACTGGGTGATACAGCTGAGCAAAAGAGATAAGCTCATGGATAAGCAATTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTTAACAAGAAATTTAAGGAGGTTGTGGCTGCCCGGGGTAGGAAGGGAACCGGAAGATTTGAGCAGGTTGAGCAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGACACATGCCTATCAGTGTGTGGAAGAAGTGTGTGCATAATATGCTTTCTATAATTGACATTCTTGTGCAGAATTCTAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAATGAGAGCCAGAAGCCAGCTGATTATAAGGGCACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATCGACACTGAGTTTTTTAAGAGTCTGCAGTGTATTGATCCACATACGCGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGAATATTTGGAACGAACTGGGGATTACAAAGCAGCTTCGAAAGTTGCCTTAAGACGTGTTGAACTGATTTATTACAAACCACAAGAGGTCTATGATGCCATGAGAAAGCTTGCAGAGCTGTCAGAAGATGGAGATAGTGGAGATGCAAATGAAGAGGCTAAAGTTGTAGAAGAGAGCAGGGGCCCTGCTGCATTTATTGTCACACCGGAGCTCGTTCCTCGCAAACCCACCTTTCCAGAGAGTAGTAGAGCTTTTATGGACATTCTAGTGACGCTCATATACCAATATGGAGATGAGCGCACTAAAGCACGAGCTATGCTCTGTGATATTTACCAACATGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTGTTGCTGATGAGTCACTTGCAGGATAGTATTCAACACTTGGACATTTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTCTATGCGGATTTCGGGTTGGCCTGATTAATGAAGGGCATGGCTGCCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTTGCACAAGGTGTCTCTCAAAGCCGATATCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGGAGGCAGATGCCATATCACATGCATATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTTCCCAACATGGCAGGCAATCTTCATGATGCAAAGCGCAAGGTTATTAGTAAGAACTTTAGAAGGTTACTTGAGGTGAGTGAGAGACAAACGTTCACCGGTCCTCCTGAGAATGTCAGAGATCACGTAATGGCTGCTACCAGAGCCCTTCGCAAGGGAGATTTCCAGAAGGCGTTTGATGTCATTGCATCTCTTGATGTATGGAAGCTACTTAGGAATCGTGATGGAGTGCTGGAAATGGTTAAAGGAAAGATTAAGGAGGAAGCTCTGAGGACTTACCTTCTCACATACTCTTCGTCTTATGATTCTCTGAGTTCAGAACAACTCACCCGAATGTTCGACCTCGCAGATGGTCAAACACACAGTATTGTCAGCAAGATGATGATCAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGCGTGTGTGATCTTCCATGATGTTACACACACCCGGTTACAGGGCCTGGCATTCCAGTTGGCAGATAAGCTGTCAATCCTTGCTGAAACTAATGAGAGGGCAGTGGAGGCAAGAATAGGAGGAGGACTAGATTTACCAATGAGGCGAAGAGACAACCAGGAATATGCTGCTGGAGCTGTAGGTGGTGGGGGTAGTAGGTGGCCAGACAACATGTCTTATAATCAAGGAAGGCAAGGTGGTGGTGGTTCGCGTGCAGGATATAGCAGCGGGGGACGAGGTCAAGGTGGGGGTGGTGGATATTCTAGAGACCGGACAGGTCAGTCACGAGGAGGCAATTCAGGATACCAAAGCACCCGTTATCAAGATGCCGCATATGGATCGGGGAGGACTGCTTATCAGTCTGGTTCTGTGCGAGGATCCCAGATGGATGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGGGTTCATGCTTAA 2823 45.09 MASRFWTQGGGSGSDSEAEESDYDEEIDDLPTDPSSQPNRSRYLQGNASDSDDSDKDKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNQAMANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKCRENPEVEEEKDEELESEEDDDDDSEIEEDPSKIMSGSEDEDEEEAQEDGPGPGGNWVIQLSKRDKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPISVWKKCVHNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERTGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGDSGDANEEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYQHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLINEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNLHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDGVLEMVKGKIKEEALRTYLLTYSSSYDSLSSEQLTRMFDLADGQTHSIVSKMMINEELHASWDQPSACVIFHDVTHTRLQGLAFQLADKLSILAETNERAVEARIGGGLDLPMRRRDNQEYAAGAVGGGGSRWPDNMSYNQGRQGGGGSRAGYSSGGRGQGGGGGYSRDRTGQSRGGNSGYQSTRYQDAAYGSGRTAYQSGSVRGSQMDASARMVSLNKGVHA 940
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 43377002 43380916 - Lag0019566.1 Lac5g2482 609124
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2482 940 MobiDBLite consensus disorder prediction 169 228 - -
Lac5g2482 940 MobiDBLite consensus disorder prediction 888 902 - -
Lac5g2482 940 Pfam PCI domain 719 790 IPR000717 -
Lac5g2482 940 MobiDBLite consensus disorder prediction 139 157 - -
Lac5g2482 940 MobiDBLite consensus disorder prediction 1 75 - -
Lac5g2482 940 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 892 IPR027516 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)|GO:0031369(PANTHER)
Lac5g2482 940 MobiDBLite consensus disorder prediction 49 74 - -
Lac5g2482 940 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 IPR000717 -
Lac5g2482 940 SUPERFAMILY Winged helix DNA-binding domain 719 792 IPR036390 -
Lac5g2482 940 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 48 653 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Lac5g2482 940 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 869 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Lac5g2482 940 MobiDBLite consensus disorder prediction 178 219 - -
Lac5g2482 940 MobiDBLite consensus disorder prediction 840 902 - -
Lac5g2482 940 MobiDBLite consensus disorder prediction 1 15 - -
Lac5g2482 940 MobiDBLite consensus disorder prediction 17 31 - -
Lac5g2482 940 MobiDBLite consensus disorder prediction 139 158 - -
Lac5g2482 940 MobiDBLite consensus disorder prediction 851 865 - -
Lac5g2482 940 Coils Coil 147 174 - -
Lac5g2482 940 MobiDBLite consensus disorder prediction 32 48 - -
Lac5g2482 940 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2482 K03252 - csv:101203990 1566.98