Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2500 ATGAACGATACCTCCAAAATCCCTTGTTGTCAAACCCTCTTGTCCTTGTATGGAATTGCTCTGGCCCAACACCTCAAAGAAACCTCTCTTTTCAACCTCCCAGACCTTGCGACCTCCAATTCTTGCCTTCGTGATTACCAATCGAAGCTCTCGTCGCTCTCCCTTCCCGGCGACCTTGTTTCGCATTGCTTTGATCCTTTGCAATTCGTGATCTCTGATAATGTCTGTGCTGGTATTCAAACTACTCGAGATTGGGTTTCGAAACTTGGCCAGAACTCGCCGCTTGATTCTGGGTGTCGGTCGGAACTTGCTGGTCCTAGTTGTGATGCTTGTCTTGCCGCTGGTTTCAAAGTTCAATCGATTTTGACTGGAATTGATGGTAATAAATCTCATTCTATGGATTGCTTTTACTTTGCTGTTCTTTATGCTGCTGGCATCGTGAATGAGTCTGGCCCTGAGGGCGACAGTGCGTTAGGTTGCATTTTTAATCTGCAATTGAGTACTGAAAAGGATTCGAAAAGTAAGCATGCTGCTCTAGTTTATGGTCTTACTGCTTCTGCTGTTGGAGTTTTGATCGTTTTTGTTCTGTTGGGGATTGGCTTTTGGTATTACAAATGGAAAAAATTGGTTAAGAAGTCTAGTTTAGAGTTTGATGTGGAGCTGGATGAACAAGGGTCTAGGCCACATGCCAGGCCAAATACTGGATCAATTTGGTTCAAGATTCAGGAGCTTGAGAAGGCAACTGATAACTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGTACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTAATTGAATCAGATTTTCAGGGCAATGCAGAGTTTTGCAATGAAGTTGAAATAATCAGTAATTTGAAGCACAGGAATCTTGTTCCCCTTAGAGGTTGTTGTGTGATTGATGGGGATGATGGTTATGATGAGAGAGAAAGTGAGAGATACCTTGTTTATGATTACATGCCGAATGGAAATCTTGACGATCATTTGTTTCTTACACCATTTGATCAAGTTGGAACTGTAAAGAAATCATTAACATGGCCTCAAAGGAAGAATATTATCTTGGATGTGGCAAAAGGCTTAGCTTATCTGCACTATGGAGTGAAACCTGCCATATATCACAGAGATATCAAGGCGACGAACATATTGCTAGATGCAGATATGAGAGCAAGAGTAGCAGATTTTGGGCTCGCTAAACAGAGCAGGGAAGGACAGTCTCATCTAACAACTCGAGTTGCAGGAACTCATGGGTATCTAGCCCCCGAATATGCGCTTTATGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTCGGAGTAGTTGTTTTAGAGATAATGTGTGGGAGAAAAGCTCTTGATTTCTCTCTGTCGTCTTCACCGCGTGCATTCCTGATCACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGGAAAATAGGGGAGACTCTAGATCCTTCTCTGCTGAAAGATGGAGATTCATCTAATTCAAATCCAAAAGCCATAATGGAGAGGTTTGTTGCGGTTGGAATTCTATGTTCTCATGTGATGGTGGCTTTAAGGCCTACCATTATGGACGCTCTGAAAATGTTGGAAGGTGACATTGAAGTCCCCCAGATTTCTGATCGGCCAGTGCCTTATGGGCACCCTTCATTTGTTGGCGATGGCAGCAACTTCAGTATATCACCGACATTGAGCGGGCCTCAATTGCATAGCGGCGACATGCTCAGATGA 1773 43.2 MNDTSKIPCCQTLLSLYGIALAQHLKETSLFNLPDLATSNSCLRDYQSKLSSLSLPGDLVSHCFDPLQFVISDNVCAGIQTTRDWVSKLGQNSPLDSGCRSELAGPSCDACLAAGFKVQSILTGIDGNKSHSMDCFYFAVLYAAGIVNESGPEGDSALGCIFNLQLSTEKDSKSKHAALVYGLTASAVGVLIVFVLLGIGFWYYKWKKLVKKSSLEFDVELDEQGSRPHARPNTGSIWFKIQELEKATDNFSSKNFIGRGGFGLVYKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDDGYDERESERYLVYDYMPNGNLDDHLFLTPFDQVGTVKKSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKIGETLDPSLLKDGDSSNSNPKAIMERFVAVGILCSHVMVALRPTIMDALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPTLSGPQLHSGDMLR 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43542531 43544303 - Lag0019584.1 Lac5g2500 609142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2500 590 Pfam SPARK 5 136 IPR043891 -
Lac5g2500 590 ProSitePatterns Protein kinases ATP-binding region signature. 257 280 IPR017441 GO:0005524(InterPro)
Lac5g2500 590 ProSiteProfiles Protein kinase domain profile. 251 520 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2500 590 FunFam probable receptor-like protein kinase At1g11050 211 335 - -
Lac5g2500 590 SUPERFAMILY Protein kinase-like (PK-like) 229 545 IPR011009 -
Lac5g2500 590 Gene3D Phosphorylase Kinase; domain 1 216 335 - -
Lac5g2500 590 Pfam Protein kinase domain 253 467 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2500 590 SMART serkin_6 251 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2500 590 PANTHER OS01G0750732 PROTEIN 6 553 IPR050885 -
Lac5g2500 590 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 336 552 - -
Lac5g2500 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2500 590 Gene3D Transferase(Phosphotransferase) domain 1 336 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0953 Lac-Chr2:7522551 Lac5g2500 Lac-Chr5:43542531 3.60E-158 dispersed
Lac4g2329 Lac-Chr4:42999112 Lac5g2500 Lac-Chr5:43542531 4.70E-93 dispersed
Lac5g2500 Lac-Chr5:43542531 Lac10g0993 Lac-Chr10:7965531 4.10E-70 dispersed
Lac5g2500 Lac-Chr5:43542531 Lac6g1291 Lac-Chr6:12958609 3.60E-66 transposed
Lac5g2500 Lac-Chr5:43542531 Lac2g2648 Lac-Chr2:40772503 3.60E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86219 PF00069 Pkinase 3.50E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2500 - - - 0.0