Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2527 ATGGAGATTGATCTTTCACTGAAAATAGATCATCACAGAGAAAAAAGTCAGCAAAAAGATGAAGAAAACCAAGAAGAAGAAGAAGAAAAAAACCATCAACTTCAAGAAAAAGCAGAAGAAGAAGAAGAAGCTGAAATTGATTTGGCTGCTGCCTCTGGTTTGAAAGTGTTTTTGCCACACAACATTAATGCAGGAGAGATTTCGGAGTTGCAGATGGAGATGGATCGGATGAAGGAAGAGAACAAGATGTTGAGAAAGGCAGTGGAAAAAACAATGAAGGATTATTATGATCTTGAAATGAAAATTGCTATCATCCAACAAAACAATCTTCACAAAAAGGATTCTCACAACTTTCTATCATTCCATGGAAGTGAGAACAAGAGGCAAGAAGAACCAAAACCAGATCACCTCGAGCTCGGAGAAACGGCAAAGAGAAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGAGAGAGGCAACTAGGGTTATCATTAGGGCTTCATACAGACAATGATTTGGAACAAGAAAACCATAAGGAAGAAGAAGAAACAAGAGAAAAGAACAAGGAATTAGATCCAACAACAACCAACTTCAATTCAATCCAAAACAAGCCACAAAGGCCTGAGTTGCAAGGAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAAGCTGCCACAATGAACGATGGTTGCCAATGGAGAAAATATGGACAGAAAATTGCAAAAGGAAATCCATGCCCTCGAGCATACTATCGTTGTACAGTTGCACCAGGTTGCCCCGTTAGAAAACAGGTCCAAAGATGCTTAGAAGACATGTCAATTCTCATAACAACGTACGAAGGAACACACAACCATCCACTCCCTGTGGGAGCCACAGCCATGGCTTCAACAGCTTCTGCAGCTGCTTCCTTCATGTTATTAGACTCTACAAATCTTTCTCTTCCAAACCCTCAAAACCCTAATATTCTAAACTCGTCCTCGTATTCTCCAACCTTCCTCGGATCTGCAAACCCTAACGAATCCTCAAAAGGGCTCGTCGTCGACCTCACAAGTAACAACTTCTATAGTCCGATGGCGAGCTCGTCGAGCTCGGCATTGGCTCAACCGTCCAATTGGATGAAAACGAACGGCCATTCGTATTACCAAAGGAACTTTCAAGCTAATATTTTGAATCCCTTTGATGGGCGGATTTGGAAACCGGCGGAGGATAATAAGCCACCGTTGACGGCGGAGAGTGTGTCTGCCATTGCTTCTGACCCTAAGTTCCGAGTCGCGGTGGCAGCTGCCATTTCGTCGCTCATTAACAAGGAGAACAACCACCCGACCGCGAATCCCGTCGAACATTCTTCTTTCGGTCCCAATAAGGATGGCGAAGGCGGTGGCGGCGGCGGCGATAATGGTAGCGGAAACAAGAAATGGGTTGTCGAATCGCTCTCGACGAATGGTAACTAA 1476 44.44 MEIDLSLKIDHHREKSQQKDEENQEEEEEKNHQLQEKAEEEEEAEIDLAAASGLKVFLPHNINAGEISELQMEMDRMKEENKMLRKAVEKTMKDYYDLEMKIAIIQQNNLHKKDSHNFLSFHGSENKRQEEPKPDHLELGETAKRRRVRSPSKEDEMRERQLGLSLGLHTDNDLEQENHKEEEETREKNKELDPTTTNFNSIQNKPQRPELQGMAPPQNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNLSLPNPQNPNILNSSSYSPTFLGSANPNESSKGLVVDLTSNNFYSPMASSSSSALAQPSNWMKTNGHSYYQRNFQANILNPFDGRIWKPAEDNKPPLTAESVSAIASDPKFRVAVAAAISSLINKENNHPTANPVEHSSFGPNKDGEGGGGGGDNGSGNKKWVVESLSTNGN 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43827611 43831984 + Lag0019611.1 Lac5g2527 609169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2527 491 MobiDBLite consensus disorder prediction 116 162 - -
Lac5g2527 491 SMART WRKY_cls 235 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2527 491 MobiDBLite consensus disorder prediction 116 221 - -
Lac5g2527 491 Coils Coil 9 51 - -
Lac5g2527 491 Coils Coil 171 191 - -
Lac5g2527 491 FunFam probable WRKY transcription factor 31 220 297 - -
Lac5g2527 491 MobiDBLite consensus disorder prediction 172 193 - -
Lac5g2527 491 MobiDBLite consensus disorder prediction 445 491 - -
Lac5g2527 491 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 25 448 IPR044810 GO:0003700(InterPro)
Lac5g2527 491 MobiDBLite consensus disorder prediction 1 39 - -
Lac5g2527 491 MobiDBLite consensus disorder prediction 1 44 - -
Lac5g2527 491 SUPERFAMILY WRKY DNA-binding domain 228 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2527 491 Gene3D WRKY domain 220 297 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2527 491 Coils Coil 67 94 - -
Lac5g2527 491 ProSiteProfiles WRKY domain profile. 230 296 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac5g2527 491 MobiDBLite consensus disorder prediction 194 208 - -
Lac5g2527 491 Pfam WRKY DNA -binding domain 236 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0367 Lac-Chr10:2868922 Lac5g2527 Lac-Chr5:43827611 1.60E-40 dispersed
Lac5g2527 Lac-Chr5:43827611 Lac7g2888 Lac-Chr7:47981406 1.90E-20 dispersed
Lac5g2527 Lac-Chr5:43827611 Lac3g0633 Lac-Chr3:4903828 3.40E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23902 PF03106 WRKY 2.00E-24 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2527 - - - 0.0