Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2537 ATGTCATTCCGAAGCATAGTTCGCGATGTGAGGGATAGCATTGGGAGTTTATCTAGACGGGGTTTTGATGTCAAGCTGGGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGTTAAATGATCTTCATGATCAGCCTTCAGTTGTTCAAAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAGCACATGGCCTTCACGAAGGAATGTCGTTGCCTGTGCTGCAGTTTGCCGTTCTTGGAGAATTATGTGCATGGAGATCGTTAAAGGCCCGGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCGCGCGATGCATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCAAAGCGCACGCGAAGAACTACCAGCACAGAGTACATTATCTCGATGGATGCAGATAACATTTCTAGATCAAGTAGCACTTACATCGGAAAGTTGAGGTCGAACTTTCTTGGAACAAAGTTCATTGTATATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCGCCGAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGAAGAATGCATTGTATAATGCATTCAATACCAGTGGCAGCTCTCGATGCAGGTGGTACCGTTCCAGGCCAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCATTCTCCAAAAGAATAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATAGGGAGGGCAGCATTGGATGGTGATGAGGAAGGAAAGATGAGACCTTTGGTTCTAAAAAACAAACCCCCGAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACTGTTGCATCGGTTAAGAACTTCCAGTTGATCGCCGCAACACAGCCAGCAGCCGGTGCTCCAACGCCGTCTCAACCAGGCCCTCCCGAGCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTATCGATATCCGCTCTCGGCTTTTCAGGCCTTTGCAATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.86 MSFRSIVRDVRDSIGSLSRRGFDVKLGGHHRGKSNASSLNDLHDQPSVVQNGCWASLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDASVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDDSFRSASFSKRIDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43923210 43925631 + Lag0019621.1 Lac5g2537 609179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2537 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Lac5g2537 428 PANTHER TUBBY-RELATED 45 427 - -
Lac5g2537 428 Pfam Tub family 115 423 IPR000007 -
Lac5g2537 428 Gene3D - 49 101 - -
Lac5g2537 428 FunFam Tubby-like F-box protein 111 428 - -
Lac5g2537 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Lac5g2537 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lac5g2537 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Lac5g2537 428 CDD F-box_AtTLP-like 54 98 - -
Lac5g2537 428 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515(InterPro)
Lac5g2537 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Lac5g2537 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2537 K19600 - - csv:101216314 837.025
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2537 Lac-Chr5:43923210 Lac8g1678 Lac-Chr8:34901823 2.60E-191 dispersed
Lac5g2537 Lac-Chr5:43923210 Lac5g2113 Lac-Chr5:39768262 5.50E-125 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1686 . 1 430 TUB Transcription Factor Family AT1G76900 73.0 7.8e-178 620.9
Lac5g2537 . 1 428 TUB Transcription Factor Family AT1G76900 71.0 3.2e-171 599.0
Lac8g1678 . 1 432 TUB Transcription Factor Family AT1G76900 69.7 9.3e-171 597.4
Lac5g2113 . 1 401 TUB Transcription Factor Family AT1G76900 50.9 4.7e-114 409.1
Lac5g2537 . 174 428 TUB Transcription Factor Family AT1G25280 73.5 4.5e-101 365.2
Lac8g1678 . 175 432 TUB Transcription Factor Family AT1G25280 71.2 1.8e-94 343.2
Lac2g1686 . 173 430 TUB Transcription Factor Family AT1G25280 68.3 3.2e-94 342.4
Lac5g2113 . 165 401 TUB Transcription Factor Family AT1G25280 55.8 2.4e-70 263.1
Lac7g0837 . 154 397 TUB Transcription Factor Family AT1G25280 50.5 1.1e-67 254.2
Lac12g2379 . 154 400 TUB Transcription Factor Family AT1G25280 51.6 3.6e-66 249.2
Lac1g2922 . 176 412 TUB Transcription Factor Family AT1G25280 50.9 2.2e-63 240.0
Lac12g2379 . 98 400 TUB Transcription Factor Family AT5G18680 60.6 5.2e-98 355.1
Lac7g0837 . 98 397 TUB Transcription Factor Family AT5G18680 60.1 7.8e-94 341.3
Lac2g1686 . 112 430 TUB Transcription Factor Family AT5G18680 53.0 2.5e-84 309.7
Lac8g1678 . 112 432 TUB Transcription Factor Family AT5G18680 52.1 1.6e-83 307.0
Lac5g2537 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 3.1e-82 302.8
Lac5g2113 . 103 401 TUB Transcription Factor Family AT5G18680 53.0 7.1e-79 291.6
Lac5g2398 . 120 388 TUB Transcription Factor Family AT5G18680 50.2 1.1e-68 257.7
Lac5g2113 . 1 401 TUB Transcription Factor Family AT2G18280 61.9 3.3e-140 495.7
Lac1g2922 . 1 412 TUB Transcription Factor Family AT2G18280 61.9 3.1e-138 489.2
Lac5g2537 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 6.0e-118 421.8
Lac2g1686 . 1 430 TUB Transcription Factor Family AT2G18280 52.5 7.4e-116 414.8
Lac8g1678 . 1 432 TUB Transcription Factor Family AT2G18280 51.8 1.2e-113 407.5
Lac7g0837 . 1 397 TUB Transcription Factor Family AT2G18280 52.0 2.0e-113 406.8
Lac12g2379 . 1 400 TUB Transcription Factor Family AT2G18280 52.0 1.0e-112 404.4
Lac5g2398 . 56 388 TUB Transcription Factor Family AT2G18280 51.4 1.1e-95 347.8
Lac12g2379 . 1 400 TUB Transcription Factor Family AT2G47900 66.9 5.6e-159 558.1
Lac7g0837 . 1 397 TUB Transcription Factor Family AT2G47900 67.1 1.4e-157 553.5
Lac2g1686 . 1 430 TUB Transcription Factor Family AT2G47900 56.1 6.2e-134 474.9
Lac5g2537 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.9e-132 467.6
Lac8g1678 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 8.4e-131 464.5
Lac5g2113 . 1 401 TUB Transcription Factor Family AT2G47900 56.6 4.2e-122 435.6
Lac1g2922 . 1 412 TUB Transcription Factor Family AT2G47900 53.1 6.9e-117 418.3
Lac5g2398 . 56 388 TUB Transcription Factor Family AT2G47900 52.6 7.4e-103 371.7
Lac4g2724 . 82 307 TUB Transcription Factor Family AT1G16070 60.9 2.3e-74 276.6
Lac2g1686 . 67 430 TUB Transcription Factor Family AT1G43640 71.3 1.0e-148 523.9
Lac5g2537 . 66 428 TUB Transcription Factor Family AT1G43640 68.5 7.4e-147 517.7
Lac8g1678 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 9.4e-142 500.7
Lac12g2379 . 47 400 TUB Transcription Factor Family AT1G43640 50.9 2.9e-106 382.9
Lac7g0837 . 49 397 TUB Transcription Factor Family AT1G43640 51.9 3.0e-103 372.9
Lac1g2922 . 33 412 TUB Transcription Factor Family AT1G47270 57.9 3.6e-123 439.1
Lac5g2113 . 22 401 TUB Transcription Factor Family AT1G47270 57.8 2.3e-122 436.4
Lac5g2537 . 1 428 TUB Transcription Factor Family AT1G47270 52.6 7.3e-116 414.8
Lac2g1686 . 1 430 TUB Transcription Factor Family AT1G47270 50.6 4.4e-113 405.6
Lac8g1678 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 1.4e-111 400.6
Lac5g2398 . 1 388 TUB Transcription Factor Family AT1G53320 70.9 2.4e-156 549.3
Lac5g2113 . 8 401 TUB Transcription Factor Family AT1G53320 51.0 1.8e-103 373.6
Lac7g0837 . 98 397 TUB Transcription Factor Family AT3G06380 61.7 1.2e-94 344.0
Lac12g2379 . 98 400 TUB Transcription Factor Family AT3G06380 60.6 1.3e-93 340.5
Lac5g2537 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 3.0e-82 302.8
Lac8g1678 . 116 432 TUB Transcription Factor Family AT3G06380 53.0 5.6e-81 298.5
Lac2g1686 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 9.6e-81 297.7
Lac5g2113 . 107 401 TUB Transcription Factor Family AT3G06380 53.5 1.1e-79 294.3
Lac1g2922 . 118 412 TUB Transcription Factor Family AT3G06380 50.7 2.3e-74 276.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23903 PF01167 Tub 1.30E-116 CL0395 Lac TF