Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2537 ATGTCATTCCGAAGCATAGTTCGCGATGTGAGGGATAGCATTGGGAGTTTATCTAGACGGGGTTTTGATGTCAAGCTGGGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGTTAAATGATCTTCATGATCAGCCTTCAGTTGTTCAAAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAGCACATGGCCTTCACGAAGGAATGTCGTTGCCTGTGCTGCAGTTTGCCGTTCTTGGAGAATTATGTGCATGGAGATCGTTAAAGGCCCGGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCGCGCGATGCATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCAAAGCGCACGCGAAGAACTACCAGCACAGAGTACATTATCTCGATGGATGCAGATAACATTTCTAGATCAAGTAGCACTTACATCGGAAAGTTGAGGTCGAACTTTCTTGGAACAAAGTTCATTGTATATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCGCCGAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGAAGAATGCATTGTATAATGCATTCAATACCAGTGGCAGCTCTCGATGCAGGTGGTACCGTTCCAGGCCAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCATTCTCCAAAAGAATAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATAGGGAGGGCAGCATTGGATGGTGATGAGGAAGGAAAGATGAGACCTTTGGTTCTAAAAAACAAACCCCCGAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACTGTTGCATCGGTTAAGAACTTCCAGTTGATCGCCGCAACACAGCCAGCAGCCGGTGCTCCAACGCCGTCTCAACCAGGCCCTCCCGAGCACGACAAGATCATTCTGCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGACTATCGATATCCGCTCTCGGCTTTTCAGGCCTTTGCAATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 47.86 MSFRSIVRDVRDSIGSLSRRGFDVKLGGHHRGKSNASSLNDLHDQPSVVQNGCWASLPPELLYDVIRRLEESESTWPSRRNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDASVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVAALDAGGTVPGQPELLPPNSLDDSFRSASFSKRIDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43923210 43925631 + Lag0019621.1 Lac5g2537 609179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2537 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Lac5g2537 428 PANTHER TUBBY-RELATED 45 427 - -
Lac5g2537 428 Pfam Tub family 115 423 IPR000007 -
Lac5g2537 428 Gene3D - 49 101 - -
Lac5g2537 428 FunFam Tubby-like F-box protein 111 428 - -
Lac5g2537 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Lac5g2537 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Lac5g2537 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lac5g2537 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Lac5g2537 428 CDD F-box_AtTLP-like 54 98 - -
Lac5g2537 428 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515(InterPro)
Lac5g2537 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Lac5g2537 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2537 Lac-Chr5:43923210 Lac8g1678 Lac-Chr8:34901823 2.60E-191 dispersed
Lac5g2537 Lac-Chr5:43923210 Lac5g2113 Lac-Chr5:39768262 5.50E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23903 PF01167 Tub 1.30E-116 CL0395 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2537 K19600 - csv:101216314 837.025