Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2552 ATGGCGGCGACAGCAGTGAGTAGAGCTTTGTTTCTGTTGGGGTTTCTTCTATTTCTTCAAATGCAGCTTCCTGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTAGTTTAGCTGCCTCTATTTGCTCTGACCCCAATGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGGTCAGCTTGCGAATGCAACAGGTGAACTGGGAGTTTCTTCAAACTTAACTAACATTTGCCTGCAATCAATATTTCAAACCATGGGACTGTATGGAGTTCCTAGAAACGCCACAGCTTTCTGTGGGGTTGGAACAAAAATTCCTGTGAACTACGCGTGTAGAGGCCGAGAAACCGTCACACAGATGCTAGAATCTCCAAAGTTTCCTAATGTCAGTGAAAATTGCAAATTGCCGCTCTCGGAGGAGAGTACCTGTAGGAAGTGTATCAATGCTGGGATTTTATATCTTCGCAATCTGATTGGAAGAGAAGATAATATAACATTAAATACTTGTCGCGACGCAACGTTTGTTGCACTTGCTAGCCAACTTGATCCTGCTTCTGTCATTGATCTTGCGACCTGCTTCTTTGGAGTTCAAGGCCTTAACAGGCCTCCAGCTCCATCCCCATCTTTGACTACACCAGATATTTCCCCAAGTCCATCAGCTGCTGCAGGTCCAGGGCCGCTAACTTTAGGTGTTTCTGATGATATAAGTCATCAACATCATTCCTACCATCTAACATTAGTGGCGGGTATTGGCATTGCGGTGACAGTAGCTTCTGTAATGATGCTGGTTGTCTTGATTGTTCTGATTCGAAGAAAAAACAGAGAGCTAAAGGATTCAGAAAAAACAGATGTCAACTCTTCAAAATCCTTCCCCTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCCATGTTTAAAAAATTCAGCTATAAAGAGATCAAGAAGGCAACAGAGAGTTTTAGTACAACAATTGGACAAGGAGGATATGGAACCGTTTATAAAGCTCAATTCAGTGATGGCTTAGTTGTAGCTGTGAAGAGGATGAACAAAAGGCGTTTAACATTGTGTGCCAACAACATGAAATGCTTTTTTTTTCTTGGCAGGTTTCTGGTATATGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTGAGTTGGCGGACAAGAATCCAAATTGCCATCGACGTCGCTAATGCTCTGGAGTACCTTCACTATTATTGTGACCCCCCACTGTGCCATAGAGACATTAAGTCCAGCAACATTTTACTAGATGAGAACTTTGTTGCTAAGGTTGCGGATTTTGGCCTTGCACATGCTTCAAAGGGGGGTTCTGTTTTCTTTGAACCCGTAAATACCGATATCCGTGGAACGCCAGGTTATATGGATCCTGAGTACGTTATCACACAAGAGCTTACCGAGAAAAGTGATATCTACAGCTACGGCGTGCTACTTCTGGAAATAGTAACTGGGAGACGTGCAATACAAGATGGGAAGAATTTAGTTGAATGGTCACAGGTGTACATGGTTTCGGATTCTAGGATATCTGAACTAGTAGATCCAAGCATCAAGTGTTCTGTTAACTTGGACCAACTTCTCACAGTCGTGTCGATTGTGAGATGGTGCACCGAGGGAGAAGGCAGAGTGAGGCCCTCGATTAAACAGGTGCTCCGGCTATTGTACGAGAGTTCGGATCCTATGCATCAAGGGCTGGTAGAAGCTGTTGATGATGAAGAATATGGAGGCACTGAAGGGAGACAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGTGATTTTTCACAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCACCACAGTCTCCTCCCAATATTTTGTCTGTCTCAGATCAATTGTTTTAG 1986 43.45 MAATAVSRALFLLGFLLFLQMQLPETMADCPLDLSGSNFSLAASICSDPNERGKCCRYINAFVAVSVGQLANATGELGVSSNLTNICLQSIFQTMGLYGVPRNATAFCGVGTKIPVNYACRGRETVTQMLESPKFPNVSENCKLPLSEESTCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDPASVIDLATCFFGVQGLNRPPAPSPSLTTPDISPSPSAAAGPGPLTLGVSDDISHQHHSYHLTLVAGIGIAVTVASVMMLVVLIVLIRRKNRELKDSEKTDVNSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATESFSTTIGQGGYGTVYKAQFSDGLVVAVKRMNKRRLTLCANNMKCFFFLGRFLVYEYMANGSLKDHLHAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSVFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSQVYMVSDSRISELVDPSIKCSVNLDQLLTVVSIVRWCTEGEGRVRPSIKQVLRLLYESSDPMHQGLVEAVDDEEYGGTEGRQSMSKRKMHKSDVIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNILSVSDQLF 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44089817 44094215 - Lag0019636.1 Lac5g2552 609194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2552 661 PANTHER OS01G0750732 PROTEIN 175 614 IPR050885 -
Lac5g2552 661 MobiDBLite consensus disorder prediction 213 236 - -
Lac5g2552 661 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
Lac5g2552 661 Gene3D Transferase(Phosphotransferase) domain 1 384 595 - -
Lac5g2552 661 Pfam Protein kinase domain 378 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2552 661 ProSiteProfiles Protein kinase domain profile. 327 587 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2552 661 SMART serkin_6 327 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2552 661 SUPERFAMILY Protein kinase-like (PK-like) 308 577 IPR011009 -
Lac5g2552 661 Pfam SPARK 28 168 IPR043891 -
Lac5g2552 661 FunFam Putative receptor-like protein kinase 384 584 - -
Lac5g2552 661 Gene3D Phosphorylase Kinase; domain 1 302 372 - -
Lac5g2552 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2552 Lac-Chr5:44089817 Lac10g3051 Lac-Chr10:45001458 4.30E-52 dispersed
Lac9g2742 Lac-Chr9:45588445 Lac5g2552 Lac-Chr5:44089817 5.20E-37 dispersed
Lac5g2552 Lac-Chr5:44089817 Lac8g1772 Lac-Chr8:35917428 2.10E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86220 PF00069 Pkinase 4.00E-31 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2552 - - - 0.0