Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2555 ATGCCTGGAAGTGTTGTTGTTGAACCCTTGGATTTGAGCCTACACATTCCATACCATTTCAGGTGCCCCATTTCTCTCGAGCTCATGCAAGACCCGGTTACGGTCAGCACTGGTCAGACCTACGACCGTTCCAGTATCGAGTCATGGGTCGCCACCGGCAACACCACCTGTCCGGTCACTAGGGCTCCGCTCACCGACTTCACGCTCATCCCCAACCATACGCTGCGACGCCTCATTCAGGATTGGTGCGTTGCCAACCGCTCTTATGGCGTCGAGCGGATTCCGACTCCCAAGCAACCGGCGGATCCGTCTTTGGTTCGCTCTCTGCTTGCTCAAGCTTCGTCGAAATCGAGTGGTTCGAGTTCCAGAATCTCGGCTCTGCGGCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCGGTGATTTCCTCGCTCAACGCTCGTGAAATTCTTCTTGATATTGTGTTTTCGAATTTGGATTTGGATTTGGATTCGGATTCGGTTTCGGTTTCGGTTTCCCCTGATTTGAGCCGCGAATCGCTCGCGTTGCTTGTGATGTTGCCGCTCACGGAATCTGAGTGCGTTCTCGTTGCGTCTGATCCGCAACGGATTGGTTACCTGTCACATCTTCTGTTTGATTCTTCGATTGAAGTCCGAATCAATGCCGCTGCGTTGATTGAAATTGTGATTGCTGGAACTCGAGCCTCGGAGCTTCGAGGTCAAATTTGCGCTATCGATGAATTGTTCGAAGGCGTGGTTGAGATTCTCAGAGATCCAACGGCGTATCCGCGAGCGCTCAAGGTCGGAGTTAAGGCCTTGTTCGCTCTCTGTTTAGTGAAACAGACCAGGCACAAGGCGGTTTCCGCCGGCGCCGCCGAGATTCTCGTCGACAGATTCCCCGATTTGGAGAAATACGACGCGGAACGAGCCCTAGCGACGATCGAACTCATATGCAGAATTCCGGCCGGTTGCGACGCGTTTGCCGCTCACGCGCTCACCGTTCCTCTGTTGGTGAAAGTCATTCTGAAGATCTCGGACAGAGCGACGGAATCGGCGGTGGGAGCTCTGGTGTCGCTGTGCTCGGCGTCGGAGGAGAACCGGCGGGAGGCGGTGGCGGCGGGGATTTTTACACAGTTGTTGTTGCTGGTGCAAAGCGATTGTACGGACCGCGTTAAGCGGAAAACGCAGGTGCTGCTGAAGCTTCTTCGGGATTCATGGCCGCAAGATTCCGTCGGAAATTCCGACGACTATGCTTGCAGTGAAATTGTGGTGCCGTTTTGTTAA 1290 54.19 MPGSVVVEPLDLSLHIPYHFRCPISLELMQDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPADPSLVRSLLAQASSKSSGSSSRISALRRLKGLARDSDKNRSVISSLNAREILLDIVFSNLDLDLDSDSVSVSVSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRGQICAIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEILVDRFPDLEKYDAERALATIELICRIPAGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGIFTQLLLLVQSDCTDRVKRKTQVLLKLLRDSWPQDSVGNSDDYACSEIVVPFC 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44126330 44127619 + Lag0019639.1 Lac5g2555 609197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2555 429 Gene3D - 305 406 IPR011989 -
Lac5g2555 429 PANTHER WDSAM1 PROTEIN 15 411 IPR045185 GO:0061630(InterPro)
Lac5g2555 429 Gene3D - 92 304 IPR011989 -
Lac5g2555 429 CDD RING-Ubox_PUB 17 69 IPR045210 -
Lac5g2555 429 SUPERFAMILY ARM repeat 106 404 IPR016024 -
Lac5g2555 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 89 IPR013083 -
Lac5g2555 429 SMART Ubox_2 19 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac5g2555 429 Pfam U-box domain 16 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac5g2555 429 ProSiteProfiles U-box domain profile. 15 89 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac5g2555 429 FunFam RING-type E3 ubiquitin transferase 10 92 - -
Lac5g2555 429 SUPERFAMILY RING/U-box 14 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1308 Lac-Chr13:12049235 Lac5g2555 Lac-Chr5:44126330 6.30E-55 dispersed
Lac2g0412 Lac-Chr2:3024051 Lac5g2555 Lac-Chr5:44126330 1.60E-29 dispersed
Lac2g0854 Lac-Chr2:6737969 Lac5g2555 Lac-Chr5:44126330 1.80E-14 dispersed
Lac5g2555 Lac-Chr5:44126330 Lac9g2738 Lac-Chr9:45540783 6.70E-46 dispersed
Lac5g2555 Lac-Chr5:44126330 Lac10g2755 Lac-Chr10:42047698 8.40E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2555 - - - 0.0