Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2559 | ATGGCAACCAATGAGCAACAACATCAGGCGGGAAGGCATCAGGAGGTTGGCCATAAGAGCCTTTTGCAGAGCGATGCTCTTTACCAGTATATTTTAGAGACAAGTGTGTACCCAAGAGAGCCAGAAGCTATGAAGGAACTTAGGGACTTGACAGCCAAACATCCATGGAATATAATGACAACATCAGCAGATGAAGGGCAGTTCTTGAACATGCTCTTGAAGCTGATCAATGCCAAGAACACGATGGAGATCGGCGTCTATACTGGCTACTCCCTCCTCGCCACCGCCCTCGCCCTTCCCGACGATGGAAAGATACTGGCAATGGATATTAACAGAGAAAACTATGAACTTGGGCTTCCAGTGATCCAAAAGGCCGGCTTGGCCCATAAGATTGAATTCAAGGAAGGCCCAGCTCTCCCTATCCTCGACCAACTCGTTGCCGACGAGAAGAACCATGGGACGTATGATTTCATCTTCGTGGATGCTGATAAGGACAATTACATTAACTATCACAAGCGGTTGATTGATTTGGTCAAAGTTGGAGGAGTGATCGGCTACGACAACACTCTATGGAATGGTTCTGTTGTGGCACCACCCGATGCGCCAATGCGCAAGTATGTGCGATATTATAGAGATTTCGTGTTGGAGCTCAACAAGGCTCTCGCTCTAGACCCGAGGATTGAAATCTGCATGCTTCCGGTTGGTGATGGAATCACCCTCTGTCGTCGGATCAACTGA | 738 | 48.24 | MATNEQQHQAGRHQEVGHKSLLQSDALYQYILETSVYPREPEAMKELRDLTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPDDGKILAMDINRENYELGLPVIQKAGLAHKIEFKEGPALPILDQLVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALALDPRIEICMLPVGDGITLCRRIN | 245 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 44148236 | 44149550 | + | Lag0019643.1 | Lac5g2559 | 609201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2559 | 245 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 20 | 244 | IPR002935 | GO:0008171(InterPro) | |
| Lac5g2559 | 245 | FunFam | Caffeoyl-CoA O-methyltransferase 1 | 13 | 245 | - | - | |
| Lac5g2559 | 245 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 24 | 243 | IPR029063 | - | |
| Lac5g2559 | 245 | Gene3D | Vaccinia Virus protein VP39 | 19 | 245 | IPR029063 | - | |
| Lac5g2559 | 245 | Pfam | O-methyltransferase | 33 | 244 | IPR002935 | GO:0008171(InterPro) | |
| Lac5g2559 | 245 | PANTHER | O-METHYLTRANSFERASE-RELATED | 17 | 244 | IPR050362 | GO:0008757(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g1636 | Lac-Chr4:35063214 | Lac5g2559 | Lac-Chr5:44148236 | 3.30E-132 | transposed | |
| Lac1g2581 | Lac-Chr1:47162329 | Lac5g2559 | Lac-Chr5:44148236 | 2.90E-110 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g2559 | K00588 | - | csv:101205648 | 468.388 |