Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2560 ATGGCCGCTCAGGTTCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCGGCGGCGAATGGTGGTGCCAACCAGTTTGTGACTACTTCTTTGTATGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGATATTTTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACTCCTCTAAATGGAAAGCCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCCGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTGGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTACAATTTGACAATGAGGAGTCTGCTCTGAAAGCTATTGAGAAGTTGAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTGCTGTTGACAAATCCAAATTTAACAATGTATTTGTCAAGAATCTTGCCGAGACAACCACTGAAGAAGATTTGAACAAGGTTTTTTCTGAATTTGGGACAATCACTAGTATTGTGGTGATGAGGGATGCTGATGGAAAATCAAAATGCTTTGGATTTGTAAATTTTGAAAATGCTGAGGATGCTGCTGGGGCTGTTGATGCCCTTAATGGAAAGGTAATTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTGAAGCATCGGTTTGAACAAACCATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAACTTGTACATTAAAAATTTAGATGACAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTTCGTATGGCACTATCACCTCATGCAAGGTCATGCGTGATCCCAATGGTATAAGCAGAGGTTCTGGTTTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCGTTGTATGTAGCACTTGCCCAGAGGAAAGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTGCGATGGCTGCTTCAGTTGCCCCTCGAATGCCATTATATCCCCCTGGTGGTCCGGGCATTGGACAGCAATTGTTTTATGGTCAAGGTCCTCCTACAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGCCCAATGCCAAATTTCTTTGTCCCGATGGTTCAGCAGGGCCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGAATGTTTTCTGTTCCATATGACATGGGAGGTATGCCATTGCGTGATGCAGCAATTTCTCAACCTATCCCAATTGGTGCTCTGGCTTCTGCTCTGGCAAATGCCACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTGGAGCCTGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTTGAGTCCCCGGAGGCTTTGAAGGCCAAAGTAGCTGAGGCTATGGAGGTTTTGAGGAATGTAGCCGCAGCTCAGCAAGCTGGCAATGCAGCTGATCAGCTAGGCTCTCTGTCACTGAACGACAACCTCGTGTCGTTCAGCCCCACGCCTGAACGATCTGATTTCAATTTGGGGCCTTCACTCCGGCAGTCCTCTCAAGCCCTAGCAATGGCGGCTCCGATCGAATCGGTGCAATGTTTCGGACGCAAGAAGACGGCGGTGGCTGTCACCTACTGCAAGCGCGGCAGGGGTTTGATTAAGATCAATGGCTGTCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCCTACGAGCCCATACTCCTCCTTGGCCGCAACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGCGGAGGTCACACCTCGCAGATCTACGCCATCCGCCAGAGTATAGCCAAGGCTCTTGTTGCATTCTACCAGAAGTACGTCGATGAGCAGAGCAAGAAGGAGATTAAAGACATTCTGGTCAGGTATGATAGGACTTTGCTTGTTGCCGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTTCAGAAGTCATACCGTTGA 2463 47.83 MAAQVQAQPQNAISGINPAANGGANQFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDSAVDKSKFNNVFVKNLAETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENAEDAAGAVDALNGKVIDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFASYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPLYPPGGPGIGQQLFYGQGPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAISQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQAGNAADQLGSLSLNDNLVSFSPTPERSDFNLGPSLRQSSQALAMAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44151357 44157688 - Lag0019644.1 Lac5g2560 609202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2560 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 CDD RRM4_I_PABPs 311 389 - -
Lac5g2560 820 SUPERFAMILY Ribosomal protein S5 domain 2-like 683 820 IPR020568 -
Lac5g2560 820 FunFam Polyadenylate-binding protein 549 631 - -
Lac5g2560 820 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676(InterPro)
Lac5g2560 820 SMART rrm1_1 31 104 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 SMART rrm1_1 313 385 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 SMART rrm1_1 119 191 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 SMART rrm1_1 210 282 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 CDD RRM3_I_PABPs 208 287 - -
Lac5g2560 820 Gene3D - 120 198 IPR012677 -
Lac5g2560 820 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723(InterPro)
Lac5g2560 820 FunFam 40S ribosomal protein S16 677 820 - -
Lac5g2560 820 Gene3D - 549 630 - -
Lac5g2560 820 PANTHER RNA BINDING PROTEIN 26 211 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Lac5g2560 820 SUPERFAMILY PABC (PABP) domain 496 645 IPR036053 GO:0003723(InterPro)
Lac5g2560 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 FunFam Polyadenylate-binding protein 200 294 - -
Lac5g2560 820 FunFam Polyadenylate-binding protein 17 115 - -
Lac5g2560 820 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 626 IPR006515 GO:0003723(InterPro)
Lac5g2560 820 Gene3D - 295 398 IPR012677 -
Lac5g2560 820 MobiDBLite consensus disorder prediction 474 495 - -
Lac5g2560 820 SMART poly_2 565 628 IPR002004 GO:0003723(InterPro)
Lac5g2560 820 ProSitePatterns Ribosomal protein S9 signature. 748 766 IPR020574 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac5g2560 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 Pfam RNA recognition motif 211 279 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 Pfam RNA recognition motif 120 188 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 Pfam RNA recognition motif 314 382 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 Pfam RNA recognition motif 32 102 IPR000504 GO:0003723(InterPro)
Lac5g2560 820 Pfam Ribosomal protein S9/S16 688 820 IPR000754 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac5g2560 820 Pfam Poly-adenylate binding protein, unique domain 560 625 IPR002004 GO:0003723(InterPro)
Lac5g2560 820 CDD RRM1_I_PABPs 31 110 IPR034364 -
Lac5g2560 820 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676(InterPro)
Lac5g2560 820 Gene3D - 199 294 IPR012677 -
Lac5g2560 820 Gene3D - 1 119 IPR012677 -
Lac5g2560 820 SMART rrm2_1 31 104 IPR003954 GO:0003676(InterPro)
Lac5g2560 820 SMART rrm2_1 313 385 IPR003954 GO:0003676(InterPro)
Lac5g2560 820 SMART rrm2_1 119 191 IPR003954 GO:0003676(InterPro)
Lac5g2560 820 SMART rrm2_1 210 282 IPR003954 GO:0003676(InterPro)
Lac5g2560 820 FunFam Polyadenylate-binding protein 116 199 - -
Lac5g2560 820 CDD RRM2_I_PABPs 116 192 IPR045305 -
Lac5g2560 820 Gene3D - 675 820 IPR014721 -
Lac5g2560 820 FunFam Polyadenylate-binding protein 295 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2939 Lac-Chr10:43999821 Lac5g2560 Lac-Chr5:44151357 6.10E-128 dispersed
Lac5g2560 Lac-Chr5:44151357 Lac8g2225 Lac-Chr8:40546497 2.40E-193 dispersed
Lac11g0425 Lac-Chr11:4343940 Lac5g2560 Lac-Chr5:44151357 1.10E-10 transposed
Lac11g0976 Lac-Chr11:10744946 Lac5g2560 Lac-Chr5:44151357 6.50E-15 transposed
Lac4g1649 Lac-Chr4:35209914 Lac5g2560 Lac-Chr5:44151357 1.70E-78 transposed
Lac4g2354 Lac-Chr4:43187016 Lac5g2560 Lac-Chr5:44151357 9.30E-11 transposed
Lac5g2525 Lac-Chr5:43786700 Lac5g2560 Lac-Chr5:44151357 1.70E-78 transposed
Lac5g3080 Lac-Chr5:48509893 Lac5g2560 Lac-Chr5:44151357 3.40E-09 transposed
Lac4g1658 Lac-Chr4:35272253 Lac5g2560 Lac-Chr5:44151357 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2560 K13126 - csv:101219802 1192.95