Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2560 | ATGGCCGCTCAGGTTCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCGGCGGCGAATGGTGGTGCCAACCAGTTTGTGACTACTTCTTTGTATGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGATATTTTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACTCCTCTAAATGGAAAGCCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCCGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTGGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTACAATTTGACAATGAGGAGTCTGCTCTGAAAGCTATTGAGAAGTTGAATGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATAGTGCTGTTGACAAATCCAAATTTAACAATGTATTTGTCAAGAATCTTGCCGAGACAACCACTGAAGAAGATTTGAACAAGGTTTTTTCTGAATTTGGGACAATCACTAGTATTGTGGTGATGAGGGATGCTGATGGAAAATCAAAATGCTTTGGATTTGTAAATTTTGAAAATGCTGAGGATGCTGCTGGGGCTGTTGATGCCCTTAATGGAAAGGTAATTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTGAAGCATCGGTTTGAACAAACCATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAACTTGTACATTAAAAATTTAGATGACAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTTCGTATGGCACTATCACCTCATGCAAGGTCATGCGTGATCCCAATGGTATAAGCAGAGGTTCTGGTTTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCGTTGTATGTAGCACTTGCCCAGAGGAAAGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTGCGATGGCTGCTTCAGTTGCCCCTCGAATGCCATTATATCCCCCTGGTGGTCCGGGCATTGGACAGCAATTGTTTTATGGTCAAGGTCCTCCTACAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGCCCAATGCCAAATTTCTTTGTCCCGATGGTTCAGCAGGGCCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTATCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGAATGTTTTCTGTTCCATATGACATGGGAGGTATGCCATTGCGTGATGCAGCAATTTCTCAACCTATCCCAATTGGTGCTCTGGCTTCTGCTCTGGCAAATGCCACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTGGAGCCTGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTTGAGTCCCCGGAGGCTTTGAAGGCCAAAGTAGCTGAGGCTATGGAGGTTTTGAGGAATGTAGCCGCAGCTCAGCAAGCTGGCAATGCAGCTGATCAGCTAGGCTCTCTGTCACTGAACGACAACCTCGTGTCGTTCAGCCCCACGCCTGAACGATCTGATTTCAATTTGGGGCCTTCACTCCGGCAGTCCTCTCAAGCCCTAGCAATGGCGGCTCCGATCGAATCGGTGCAATGTTTCGGACGCAAGAAGACGGCGGTGGCTGTCACCTACTGCAAGCGCGGCAGGGGTTTGATTAAGATCAATGGCTGTCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCCTACGAGCCCATACTCCTCCTTGGCCGCAACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAGGGCGGAGGTCACACCTCGCAGATCTACGCCATCCGCCAGAGTATAGCCAAGGCTCTTGTTGCATTCTACCAGAAGTACGTCGATGAGCAGAGCAAGAAGGAGATTAAAGACATTCTGGTCAGGTATGATAGGACTTTGCTTGTTGCCGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTTCAGAAGTCATACCGTTGA | 2463 | 47.83 | MAAQVQAQPQNAISGINPAANGGANQFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDSAVDKSKFNNVFVKNLAETTTEEDLNKVFSEFGTITSIVVMRDADGKSKCFGFVNFENAEDAAGAVDALNGKVIDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFASYGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPLYPPGGPGIGQQLFYGQGPPTMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAISQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQAGNAADQLGSLSLNDNLVSFSPTPERSDFNLGPSLRQSSQALAMAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR | 820 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 44151357 | 44157688 | - | Lag0019644.1 | Lac5g2560 | 609202 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2560 | 820 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 118 | 190 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | CDD | RRM4_I_PABPs | 311 | 389 | - | - | |
Lac5g2560 | 820 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 683 | 820 | IPR020568 | - | |
Lac5g2560 | 820 | FunFam | Polyadenylate-binding protein | 549 | 631 | - | - | |
Lac5g2560 | 820 | SUPERFAMILY | RNA-binding domain, RBD | 30 | 199 | IPR035979 | GO:0003676(InterPro) | |
Lac5g2560 | 820 | SMART | rrm1_1 | 31 | 104 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | SMART | rrm1_1 | 313 | 385 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | SMART | rrm1_1 | 119 | 191 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | SMART | rrm1_1 | 210 | 282 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | CDD | RRM3_I_PABPs | 208 | 287 | - | - | |
Lac5g2560 | 820 | Gene3D | - | 120 | 198 | IPR012677 | - | |
Lac5g2560 | 820 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 553 | 630 | IPR002004 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | FunFam | 40S ribosomal protein S16 | 677 | 820 | - | - | |
Lac5g2560 | 820 | Gene3D | - | 549 | 630 | - | - | |
Lac5g2560 | 820 | PANTHER | RNA BINDING PROTEIN | 26 | 211 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Lac5g2560 | 820 | SUPERFAMILY | PABC (PABP) domain | 496 | 645 | IPR036053 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 30 | 108 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | FunFam | Polyadenylate-binding protein | 200 | 294 | - | - | |
Lac5g2560 | 820 | FunFam | Polyadenylate-binding protein | 17 | 115 | - | - | |
Lac5g2560 | 820 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 31 | 626 | IPR006515 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | Gene3D | - | 295 | 398 | IPR012677 | - | |
Lac5g2560 | 820 | MobiDBLite | consensus disorder prediction | 474 | 495 | - | - | |
Lac5g2560 | 820 | SMART | poly_2 | 565 | 628 | IPR002004 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | ProSitePatterns | Ribosomal protein S9 signature. | 748 | 766 | IPR020574 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Lac5g2560 | 820 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 312 | 389 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 209 | 286 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | Pfam | RNA recognition motif | 211 | 279 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | Pfam | RNA recognition motif | 120 | 188 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | Pfam | RNA recognition motif | 314 | 382 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | Pfam | RNA recognition motif | 32 | 102 | IPR000504 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | Pfam | Ribosomal protein S9/S16 | 688 | 820 | IPR000754 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Lac5g2560 | 820 | Pfam | Poly-adenylate binding protein, unique domain | 560 | 625 | IPR002004 | GO:0003723(InterPro) | |
Lac5g2560 | 820 | CDD | RRM1_I_PABPs | 31 | 110 | IPR034364 | - | |
Lac5g2560 | 820 | SUPERFAMILY | RNA-binding domain, RBD | 209 | 393 | IPR035979 | GO:0003676(InterPro) | |
Lac5g2560 | 820 | Gene3D | - | 199 | 294 | IPR012677 | - | |
Lac5g2560 | 820 | Gene3D | - | 1 | 119 | IPR012677 | - | |
Lac5g2560 | 820 | SMART | rrm2_1 | 31 | 104 | IPR003954 | GO:0003676(InterPro) | |
Lac5g2560 | 820 | SMART | rrm2_1 | 313 | 385 | IPR003954 | GO:0003676(InterPro) | |
Lac5g2560 | 820 | SMART | rrm2_1 | 119 | 191 | IPR003954 | GO:0003676(InterPro) | |
Lac5g2560 | 820 | SMART | rrm2_1 | 210 | 282 | IPR003954 | GO:0003676(InterPro) | |
Lac5g2560 | 820 | FunFam | Polyadenylate-binding protein | 116 | 199 | - | - | |
Lac5g2560 | 820 | CDD | RRM2_I_PABPs | 116 | 192 | IPR045305 | - | |
Lac5g2560 | 820 | Gene3D | - | 675 | 820 | IPR014721 | - | |
Lac5g2560 | 820 | FunFam | Polyadenylate-binding protein | 295 | 400 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g2939 | Lac-Chr10:43999821 | Lac5g2560 | Lac-Chr5:44151357 | 6.10E-128 | dispersed | |
Lac5g2560 | Lac-Chr5:44151357 | Lac8g2225 | Lac-Chr8:40546497 | 2.40E-193 | dispersed | |
Lac11g0425 | Lac-Chr11:4343940 | Lac5g2560 | Lac-Chr5:44151357 | 1.10E-10 | transposed | |
Lac11g0976 | Lac-Chr11:10744946 | Lac5g2560 | Lac-Chr5:44151357 | 6.50E-15 | transposed | |
Lac4g1649 | Lac-Chr4:35209914 | Lac5g2560 | Lac-Chr5:44151357 | 1.70E-78 | transposed | |
Lac4g2354 | Lac-Chr4:43187016 | Lac5g2560 | Lac-Chr5:44151357 | 9.30E-11 | transposed | |
Lac5g2525 | Lac-Chr5:43786700 | Lac5g2560 | Lac-Chr5:44151357 | 1.70E-78 | transposed | |
Lac5g3080 | Lac-Chr5:48509893 | Lac5g2560 | Lac-Chr5:44151357 | 3.40E-09 | transposed | |
Lac4g1658 | Lac-Chr4:35272253 | Lac5g2560 | Lac-Chr5:44151357 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g2560 | K13126 | - | csv:101219802 | 1192.95 |