Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2569 ATGAGCTTCAAAACCAGAAATCTCGCTCTGTTTCGGAGCTTCACTTTCTTCTTCCTTCTTCCTTTTCCATCTCTGGCTCTCAACGGCGATGGCACCCTCTTGATTTCTCTCAAACGCTCCATTCTCGGCGATCCCTTGTCCGTTTTGGCTAATTGGAACTTTAACGATGTGACCCCCTGTTCCTGGCGTGGAGTTACCTGCACCGACCTTCAAAGCTACGGAGGCGCCTGGTCGGATTCCTTCAGAGTCACTGCCGTGTCCCTCCCCGGCAGCCAGCTTCTGGGTTCCATTCCTGACGAGCTGGGAAGGATAGAACACCTTCGTCTTCTCGATCTTTCTGGTAATTTCTTTAATGGGTCTCTGCCGCTTTCCATTTTCAATGCTTCTGAGCTTCAGATTCTTTCTCTTTCGAACAATGTCATTTCCGGCGAGCTGCCGGCGGCTATTGGGGGGTTGAAGAGTCTGCAGGTTTTGAATCTGTCGGATAATGCGTTGGCTGGAAAAGTGCCGGGAAATCTCACTGCTCTGAAGAATCTCACCGTTGTTTCTCTGAGGAGTAATTACTTCACCGGAGATATTCCGGGGAATTTCAGTTCGGTTGAGGTTTTGGATCTGTCGTCTAATTTGCTCAATGAGTCTCTGCCGGCGGATTTTGGTGGGGAGAAACTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTCCGATTCCGTTGGAGTTTGCCAAGAGGATTCCGGCGAATGCGACGTTGGATTTCTCTTTCAACAATCTCACCGGAGCAATTCCTCAGTCGATTGCTCTGCTCAGCCAGAAAACAGAGGCGTTCGCTGGAAATGAAGATCTCTGCGGGAAGCCATTGAAGCACCTCTGTTCGATTCCTTCTTCACTCACAACTCCTCCAAATGTTTCTGAAACTTCATCTTCTTCTCCGGCTATAGCCGCCATACCCAAAACAATCGGCTCTATTCCGGCGACACAGTCCCCCGGAGGTCCAAACGGGACACAAAATCCCCAGCCGCAGAACACCATGAAACCCATCACAATAGCCGCCATCGCCGTCGGAGACCTGGCCGGAGTCGCTATTCTCGCCGTCGTCATTCTCTACGTCTACCATCACCGGAAACGGAAAGACCCCAACTTCAAATCCCCTAAATCCGCTGAGAAGAAGCCGCCGATTGGCTCAGAACAGAACCTCCAAACTAATCAGAAAAAACCCTCGTCCGTGTTGTTCTGTTTGCCCAACAAAGGCGAAGAGACATCGGAGGCGACGAGTTCCTCCGACGGCGAAGAACAGAGAGACAAACCCGACGCAACCCACGGCGGAGAGAACAGAGAGAGTAAGAAAAACGGCGTTTTGGTGACGGTGGACGGAGAAACGGAGCTCGAATTGGAGACTCTGTTAAAAGCGTCGGCGTACATACTCGGAGCGAGCGGCGGGAGCATTGTGTACAAGGCGGTGCTGGAGGACGGCACGGCGTTCGCCGTCAGAAGGATCGGCGACGGCGGCGTTGAGAGATTGAGGGATTTCGAGGCCCAAGTGAGAGCCATTGCTAAGCTTCGACATCAAAATTTGGTGAAAATTCGAGGGTTCTTTTGGGGAGAAGATGAAAAGCTCATCATCTATGACTACCTCTCCAATGGCTGCCTTGCAACCTCCATTCACAGAAAACCGAGTTCGTCGTCTTCTTCCCAAAGCCACCTATCATTCGAAGTCCGACTGAAAATCGCCAGAGGAATCGCCCGAGGACTGACCTTCATCCACGACAAGAAGCACGTCCATGGCAACCTCAAGCCTTCCAACATCCTCCTCAACGCCGACATGGATCCTTTAATCACGGATCTCGGCCTCGACAAGCTCCTCTCCGGCGGCTCCAAAATCGCTCTCGCCTCCGGTTCGGCCCGAAACTTCGGCAGCCACAGATCCACGCCGAATCGCGAGCACCAAGACGGAAACACCGGCGGCGGAGGCGCAATTAGCGTGGGAAGCCCCGCCGTGAGCCAGGGATCGGCGTACCAGGCGCCGGAATCGCTGAAGAATCTGAAACCCAGCCCTAAATGGGACGTGTACTCGTTCGGAGTGATTCTACTGGAGGTTTTGAGCGGGAGATTGGTGACGGAGAGGGAGGTGAATCAATGGAGCGGCGGGGAGGATGAGGGGCGGATGAAGAAGATGATCGATTTGACGATCCGAGGGGAAGTGGAAGGGAAAGAGGAGGCGGCGGTGGGGATTTTGAGATTAGGGTTTAGCTGTGTTTGTTTTGTGCCTCAAAGGAGACCGAGCATGAAAGAAGCACTACAAATGCTTGACAAAATCTGTTCCACCATTTCTTGTTGA 2337 52.33 MSFKTRNLALFRSFTFFFLLPFPSLALNGDGTLLISLKRSILGDPLSVLANWNFNDVTPCSWRGVTCTDLQSYGGAWSDSFRVTAVSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPLSIFNASELQILSLSNNVISGELPAAIGGLKSLQVLNLSDNALAGKVPGNLTALKNLTVVSLRSNYFTGDIPGNFSSVEVLDLSSNLLNESLPADFGGEKLRYLNFSYNKISSPIPLEFAKRIPANATLDFSFNNLTGAIPQSIALLSQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSETSSSSPAIAAIPKTIGSIPATQSPGGPNGTQNPQPQNTMKPITIAAIAVGDLAGVAILAVVILYVYHHRKRKDPNFKSPKSAEKKPPIGSEQNLQTNQKKPSSVLFCLPNKGEETSEATSSSDGEEQRDKPDATHGGENRESKKNGVLVTVDGETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDGGVERLRDFEAQVRAIAKLRHQNLVKIRGFFWGEDEKLIIYDYLSNGCLATSIHRKPSSSSSSQSHLSFEVRLKIARGIARGLTFIHDKKHVHGNLKPSNILLNADMDPLITDLGLDKLLSGGSKIALASGSARNFGSHRSTPNREHQDGNTGGGGAISVGSPAVSQGSAYQAPESLKNLKPSPKWDVYSFGVILLEVLSGRLVTEREVNQWSGGEDEGRMKKMIDLTIRGEVEGKEEAAVGILRLGFSCVCFVPQRRPSMKEALQMLDKICSTISC 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44238429 44242536 - Lag0019653.1 Lac5g2569 609211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2569 778 SUPERFAMILY Protein kinase-like (PK-like) 474 772 IPR011009 -
Lac5g2569 778 Gene3D Ribonuclease Inhibitor 28 196 IPR032675 -
Lac5g2569 778 MobiDBLite consensus disorder prediction 393 409 - -
Lac5g2569 778 Pfam Protein kinase domain 475 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2569 778 MobiDBLite consensus disorder prediction 321 342 - -
Lac5g2569 778 Gene3D Transferase(Phosphotransferase) domain 1 545 777 - -
Lac5g2569 778 ProSiteProfiles Protein kinase domain profile. 469 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2569 778 MobiDBLite consensus disorder prediction 377 452 - -
Lac5g2569 778 Pfam Leucine rich repeat N-terminal domain 27 68 IPR013210 -
Lac5g2569 778 ProSiteProfiles Leucine-rich repeat profile. 222 243 IPR001611 GO:0005515(InterPro)
Lac5g2569 778 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 27 192 - -
Lac5g2569 778 MobiDBLite consensus disorder prediction 634 660 - -
Lac5g2569 778 SUPERFAMILY L domain-like 30 289 - -
Lac5g2569 778 Gene3D Ribonuclease Inhibitor 197 293 IPR032675 -
Lac5g2569 778 Pfam Leucine rich repeat 178 233 IPR001611 GO:0005515(InterPro)
Lac5g2569 778 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515(InterPro)
Lac5g2569 778 Gene3D Phosphorylase Kinase; domain 1 438 544 - -
Lac5g2569 778 FunFam Leucine-rich repeat receptor-like protein kinase 199 293 - -
Lac5g2569 778 PANTHER OS05G0588300 PROTEIN 177 773 IPR050994 -
Lac5g2569 778 MobiDBLite consensus disorder prediction 426 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2569 Lac-Chr5:44238429 Lac8g1491 Lac-Chr8:32253089 9.80E-80 dispersed
Lac5g2569 Lac-Chr5:44238429 Lac9g1306 Lac-Chr9:30224507 5.30E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86221 PF00069 Pkinase 4.10E-29 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2569 - - - 0.0