Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2599 ATGGAACCTATAGGAGCCATTTCAGAAAGAGAATGGATCTCTCTCAGTGGAACATATACAGCTGAGGAATCTGATTTCATGGCTAATTTGCTCAATAACTACTGTCTTCCAAATGAGCTAAGTTCAGGTTTGAGCTTGGAAATCCCTTCTGCTTATAATTGGGCTGCCAATGAGCCACCACCATCCTTGACCATGGCAGCCATGGATGAACCTTCTTATTATTCTTCAGATGCTACTTCTGATTCTTCCAATATTTATGGCCTTCCACAAGGTAACAGCAATCATCATTACACCTTGAGTGATTCCCACCCTCTTTGGCTTCCCAATGGTGCCTCTTTGTCCTTGGATTTCTCCTTGGAGGATGTCGGGAATGCCGATCGCTTGGACGACAACGGTTCGAGTCGAAAAACAAAGCAATGCAGGCTGCAACACTCCCCTGCTGACCCTGCTGCTGCACTTGCTGTCAATGGGAAGAGCTTGCAACCGAAAAGGAGAGCCGAGGCGACGGCGGAAGAAGCTATGAGAGACGAGAAAGTTGCACCGATGTCGGTCGACGACATTTCGAAGAAGCGATCGCTGAGTTTGCTTGATGTCGAAAAGACGAAGAGGAGCGCGAGGGAACGGAAGAGACCGAAGCTTGGTTCGGCTAGCTGCAATGAAGAGGATCAGATTGTTAGTCCAAATGGGCAGTGCACAAGCAGCTTCAGCTCTGAAGATGACTGTAATGAGCCTCAAGAAATCAACAATGGAGTGAGTTCTAGCTCAAGCTCAAAAGGGTCTGGAACTTTGACCTCAAATGGAAAGCCAAGAGCCAGCAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAGAATCTTACAGAGCCTCGTCCCGAACGGCACGAAGGTTGACATCAGTACAATGCTTGAAGAAGCAGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCTGATGATCTGTGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTCATGAAGCAAGACAATGCATCACAATAG 1092 46.43 MEPIGAISEREWISLSGTYTAEESDFMANLLNNYCLPNELSSGLSLEIPSAYNWAANEPPPSLTMAAMDEPSYYSSDATSDSSNIYGLPQGNSNHHYTLSDSHPLWLPNGASLSLDFSLEDVGNADRLDDNGSSRKTKQCRLQHSPADPAAALAVNGKSLQPKRRAEATAEEAMRDEKVAPMSVDDISKKRSLSLLDVEKTKRSARERKRPKLGSASCNEEDQIVSPNGQCTSSFSSEDDCNEPQEINNGVSSSSSSKGSGTLTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44432947 44434406 + Lag0019683.1 Lac5g2599 609241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2599 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 340 IPR036638 GO:0046983(InterPro)
Lac5g2599 363 MobiDBLite consensus disorder prediction 164 185 - -
Lac5g2599 363 CDD bHLH_AtIND_like 276 338 - -
Lac5g2599 363 MobiDBLite consensus disorder prediction 219 279 - -
Lac5g2599 363 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983(InterPro)
Lac5g2599 363 Gene3D - 277 333 IPR036638 GO:0046983(InterPro)
Lac5g2599 363 SMART finulus 281 330 IPR011598 GO:0046983(InterPro)
Lac5g2599 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983(InterPro)
Lac5g2599 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 83 347 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac5g2599 363 MobiDBLite consensus disorder prediction 198 285 - -
Lac5g2599 363 MobiDBLite consensus disorder prediction 198 216 - -
Lac5g2599 363 MobiDBLite consensus disorder prediction 127 185 - -
Lac5g2599 363 FunFam Basic helix-loop-helix transcription factor 276 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2599 Lac-Chr5:44432947 Lac6g2849 Lac-Chr6:46113787 4.80E-13 dispersed
Lac8g1945 Lac-Chr8:37821383 Lac5g2599 Lac-Chr5:44432947 2.20E-18 transposed
Lac12g0175 Lac-Chr12:1962102 Lac5g2599 Lac-Chr5:44432947 2.90E-46 wgd
Lac2g0387 Lac-Chr2:2845294 Lac5g2599 Lac-Chr5:44432947 6.60E-41 wgd
Lac5g2599 Lac-Chr5:44432947 Lac6g0252 Lac-Chr6:2037952 1.70E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23909 PF00010 HLH 7.70E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2599 - - - 0.0