Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2619 ATGGGTGCTCCGAAGCAGAAATGGACTAGCCAGGAAGAGGCAGCGCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACAATACTTAAAGATCCGGAATTCAGCAATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAAAGATTGCATGCTCCTAAAAAAGATGAGAGCATTGTGGCTCAAAGTGTTGCTGTCCAAAGTGAAGATGAAGTGCCAGAAGCTAAGTCTGTTTCCCTTTCCACGGATATCAAGCAGATAGCTGGTCCAAAGCGATCAAATGTAAGAAAAGAAGAGGAGGAGGAAGAAGAAGAAGAAAAGGAAGTAGAAAGAATAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTAAGGGAACGTGCTGGCTCTAGTAAGTCAAACATTGCTTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCAACAAAATTGAAGTTCTTAACTGCTAGTGGTAAACTGGTCAAGGTTAAACGGAAATATAAGCTTGCTCCAGCGTTGTCTTCTTCAGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCATCATAGAGCTTCTATAAGAGCTGACAAGGATGAAATGTGTACTCTTGCAAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCAGCAGCTGCTGCTCGAGCAGTCGCAGAAGCAGAAGCAGCAATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCTGATGCCGAAGCAGCACAATCTTTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 972 44.55 MGAPKQKWTSQEEAALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDESIVAQSVAVQSEDEVPEAKSVSLSTDIKQIAGPKRSNVRKEEEEEEEEEKEVERIERDARYDCHRLDNLIIEAISTLRERAGSSKSNIASYIEDQYWAPPDFKRLLSTKLKFLTASGKLVKVKRKYKLAPALSSSERRGSMLLLDDHHRASIRADKDEMCTLAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44693250 44699230 - Lag0019703.1 Lac5g2619 609261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2619 323 CDD H15 151 214 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac5g2619 323 SMART h15plus2 142 208 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac5g2619 323 Coils Coil 266 303 - -
Lac5g2619 323 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lac5g2619 323 CDD SANT_TRF 6 56 - -
Lac5g2619 323 SMART sant 4 59 IPR001005 -
Lac5g2619 323 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 213 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac5g2619 323 SUPERFAMILY Winged helix DNA-binding domain 145 220 IPR036390 -
Lac5g2619 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lac5g2619 323 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Lac5g2619 323 Gene3D - 145 221 IPR036388 -
Lac5g2619 323 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lac5g2619 323 Pfam linker histone H1 and H5 family 150 206 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac5g2619 323 Coils Coil 118 141 - -
Lac5g2619 323 Gene3D - 2 59 - -
Lac5g2619 323 MobiDBLite consensus disorder prediction 115 134 - -
Lac5g2619 323 FunFam Telomere repeat-binding factor 1 2 58 - -
Lac5g2619 323 PANTHER SINGLE MYB HISTONE 4 1 317 IPR044597 GO:0003691(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2619 K09422 - - csv:101218411 459.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2644 Lac-Chr11:42437713 Lac5g2619 Lac-Chr5:44693250 2.10E-08 dispersed
Lac12g2458 Lac-Chr12:41648611 Lac5g2619 Lac-Chr5:44693250 4.80E-29 transposed
Lac1g2672 Lac-Chr1:47956081 Lac5g2619 Lac-Chr5:44693250 1.20E-65 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g2619 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 58.8 7.7e-73 271.6
Lac1g2672 . 125 370 Single Myb Histone (SMH) Gene Family AT1G49950 54.7 1.5e-63 240.7
Lac1g2672 . 125 370 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 7.7e-65 245.0
Lac1g2672 . 125 370 Single Myb Histone (SMH) Gene Family AT3G49850 52.2 4.8e-59 225.7
Lac12g2458 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 50.7 8.5e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23910 PF00538 Linker_histone 1.40E-10 CL0123 Lac TF