Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2619 ATGGGTGCTCCGAAGCAGAAATGGACTAGCCAGGAAGAGGCAGCGCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACAATACTTAAAGATCCGGAATTCAGCAATGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAACATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAAAGATTGCATGCTCCTAAAAAAGATGAGAGCATTGTGGCTCAAAGTGTTGCTGTCCAAAGTGAAGATGAAGTGCCAGAAGCTAAGTCTGTTTCCCTTTCCACGGATATCAAGCAGATAGCTGGTCCAAAGCGATCAAATGTAAGAAAAGAAGAGGAGGAGGAAGAAGAAGAAGAAAAGGAAGTAGAAAGAATAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTTCTACCTTAAGGGAACGTGCTGGCTCTAGTAAGTCAAACATTGCTTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCAACAAAATTGAAGTTCTTAACTGCTAGTGGTAAACTGGTCAAGGTTAAACGGAAATATAAGCTTGCTCCAGCGTTGTCTTCTTCAGAGAGAAGGGGCTCTATGTTATTGTTGGACGACCATCATAGAGCTTCTATAAGAGCTGACAAGGATGAAATGTGTACTCTTGCAAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCAGCAGCTGCTGCTCGAGCAGTCGCAGAAGCAGAAGCAGCAATAGCAGAAGCTGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAAGCTGATGCCGAAGCAGCACAATCTTTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 972 44.55 MGAPKQKWTSQEEAALKAGVVKHGAGKWRTILKDPEFSNVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDESIVAQSVAVQSEDEVPEAKSVSLSTDIKQIAGPKRSNVRKEEEEEEEEEKEVERIERDARYDCHRLDNLIIEAISTLRERAGSSKSNIASYIEDQYWAPPDFKRLLSTKLKFLTASGKLVKVKRKYKLAPALSSSERRGSMLLLDDHHRASIRADKDEMCTLAKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44693250 44699230 - Lag0019703.1 Lac5g2619 609261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2619 323 CDD H15 151 214 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac5g2619 323 SMART h15plus2 142 208 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac5g2619 323 Coils Coil 266 303 - -
Lac5g2619 323 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lac5g2619 323 CDD SANT_TRF 6 56 - -
Lac5g2619 323 SMART sant 4 59 IPR001005 -
Lac5g2619 323 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 145 213 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac5g2619 323 SUPERFAMILY Winged helix DNA-binding domain 145 220 IPR036390 -
Lac5g2619 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Lac5g2619 323 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Lac5g2619 323 Gene3D - 145 221 IPR036388 -
Lac5g2619 323 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lac5g2619 323 Pfam linker histone H1 and H5 family 150 206 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac5g2619 323 Coils Coil 118 141 - -
Lac5g2619 323 Gene3D - 2 59 - -
Lac5g2619 323 MobiDBLite consensus disorder prediction 115 134 - -
Lac5g2619 323 FunFam Telomere repeat-binding factor 1 2 58 - -
Lac5g2619 323 PANTHER SINGLE MYB HISTONE 4 1 317 IPR044597 GO:0003691(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2644 Lac-Chr11:42437713 Lac5g2619 Lac-Chr5:44693250 2.10E-08 dispersed
Lac12g2458 Lac-Chr12:41648611 Lac5g2619 Lac-Chr5:44693250 4.80E-29 transposed
Lac1g2672 Lac-Chr1:47956081 Lac5g2619 Lac-Chr5:44693250 1.20E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23910 PF00538 Linker_histone 1.40E-10 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2619 K09422 - csv:101218411 459.529