Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2636 ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAAGTCACCTTCTCGAAGCGTCGGTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTCTGTGGCGCCGAGATCGCCATCATCGTCTTCTCGCCTGGGAAGAAGGTGTTCTCTTTTGGCCACCCTTGCGTCGAGGCTCTTATCGAGCGCTTTGTGACTCGAAACCCTCCACCGAGCTCTGGTACACTCCAATTGATCGAAGCTCACCGAAATGCCAATGTTCGAGAACTGAATGCACAACTAACTCAAGTGTTGAATCAGTTAGAGATGGAGCGAAAGCGTGGTGAGGAGTTAAACAAACTGCGAAAGGCAAGCCAGGCACAATGCTGGTGGGAGCTTCCCATTGAAGAATTGGAAATGCATCAACTTGAACAACTTAAAGCATCTTTAGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATAGGATTTTGATTCAAACCTCCAATGGCAATCCGCCGCCGCAGTTCTTCCCGACTCCGACGCCTACAAACCCGAACCAGCAAGGCGGCGTTTTCGTCGTCGATTCAAAGAACATGATTTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 660 49.24 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEELEMHQLEQLKASLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPTNPNQQGGVFVVDSKNMISHLPYNYGSYGSRGFF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44858517 44859323 + Lag0019720.1 Lac5g2636 609278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2636 219 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2636 219 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2636 219 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2636 219 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2636 219 Gene3D - 83 175 - -
Lac5g2636 219 Gene3D - 17 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2636 219 Coils Coil 138 165 - -
Lac5g2636 219 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2636 219 Coils Coil 93 120 - -
Lac5g2636 219 FunFam Agamous-like MADS-box protein AGL62 17 83 - -
Lac5g2636 219 SMART madsneu2 5 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2636 219 PANTHER MADS BOX PROTEIN 6 157 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac5g2636 219 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac5g2636 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2636 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1062 Lac-Chr10:8586093 Lac5g2636 Lac-Chr5:44858517 9.10E-26 dispersed
Lac5g2636 Lac-Chr5:44858517 Lac9g1189 Lac-Chr9:27714336 1.00E-26 dispersed
Lac5g2636 Lac-Chr5:44858517 Lac1g3500 Lac-Chr1:54281170 7.60E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
Lac13g0329 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 2.4e-95 346.7
Lac10g0086 . 1 262 Type I MADS-box Gene Family AT2G03060 50.4 1.5e-65 247.7
Lac5g2636 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 1.8e-50 197.2
Lac3g3071 . 1 157 Type I MADS-box Gene Family AT5G48670 67.5 7.7e-55 211.8
Lac10g1488 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 2.0e-47 187.2
Lac5g2636 . 4 159 Type I MADS-box Gene Family AT2G24840 54.7 4.1e-38 156.0
Lac5g2008 . 1 230 Type I MADS-box Gene Family AT1G77950 51.0 3.9e-54 209.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23911 PF00319 SRF-TF 3.50E-24 No_clan Lac TF