Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2657 ATGGGAAGAGGAAAGATTGTGATTAGAAGGATAGATAATTCAACAAGCAGGCAAGTGACTTTTTCAAAGAGAAGAAGTGGATTGCTGAAAAAGGCTCGAGAGCTTTCAATCCTTTGCGATGCTGAAGTTGGATTGATCATTTTTTCAAGTACTGGAAAACTCTATGATTATTCCAGCACCAGCATAAGGTCGATTACTGAACGCTACAGCAAGATGAAGGAAGAGCAAAATCAGTTGATGAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCGGGCCTTAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAAAAGGAAAAGATTTTAAGTGATGAAATTACTGAGCTAAGACAGAAGGGAAATCATATGCATCAGGAAAACGTGGAACTCTACAAGAAACTAGATATGATTCGTAAGGAAAATACAGAACTGCAAATGAAGGTTTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCTACAGCTAAGTCAGCCACAACCACAAAACAACGATACACCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTATTCATGACATGAATTGA 732 39.48 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSTSIRSITERYSKMKEEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENVELYKKLDMIRKENTELQMKVYGPMEVDKTSSSSVHQFTITNRYSMPALQLSQPQPQNNDTPVPGIKLGYVLAICIHDMN 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45040827 45051430 - Lag0019741.1 Lac5g2657 609299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2657 243 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2657 243 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac5g2657 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2657 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2657 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2657 243 Coils Coil 62 99 - -
Lac5g2657 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac5g2657 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2657 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac5g2657 243 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lac5g2657 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2657 243 Gene3D - 13 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2657 243 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2657 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac5g2657 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0329 Lac-Chr13:2358369 Lac5g2657 Lac-Chr5:45040827 1.20E-13 dispersed
Lac1g1324 Lac-Chr1:33290248 Lac5g2657 Lac-Chr5:45040827 1.10E-31 dispersed
Lac1g2759 Lac-Chr1:48747636 Lac5g2657 Lac-Chr5:45040827 3.00E-56 dispersed
Lac1g3453 Lac-Chr1:53893475 Lac5g2657 Lac-Chr5:45040827 1.00E-37 dispersed
Lac5g2657 Lac-Chr5:45040827 Lac7g0288 Lac-Chr7:2240055 2.40E-32 dispersed
Lac5g2657 Lac-Chr5:45040827 Lac2g0801 Lac-Chr2:6274321 6.90E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23912 PF01486 K-box 1.40E-26 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2657 K09264 - csv:101203098 413.69