Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2701 | ATGGAAGATTACCATGTTGCTAAATTTATTACCGTGCATGGCCGTGAGCTCGGCCTTTTTGCTATATATGATGGACATCTAGGAGACAGCGTACCTGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCCCGCGGCTCCATCTTTAAGGCTTATGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTGGGAAGAGGTGGATCCACTGCTGTCACTGCAATTTTAATAAACGGTCAAAAATTATGGGTGGCTAATGTTGGAGATTCACGGGCAGTCCTTTCGAAAAAAGGGCAGGAAGTACAAATGTCCATTGATCATGAACCAAACACCGAGCGAGGAAGTATTGAGGACAGAGGTGGTTTTGTCTCTAACATGCCAGGAGATGTTGCAAGAGTGAACGGGCAACTTGCAGTTTCTCGAGCGTTTGGCGACAAGAACCTCAAAACACACTTGCGATCTGATCCCGACATAAAGAATGCAGACATTGACTCTGACACCGAGCTTCTTATCTTAGCAAGTGATGGTCTATGGAAGGTCATGACGAATCAAGAAGCCGTGGATATAGCCAGAAGGACCAAGGATCCCCAGAGGGCAGCAAAGCAATTAGCTGCAGAAGCACTGAAAAGAGAAAGCAAAGACGACATCTCGATCATCGTAGTTCGTTTCAAAGGGTAA | 711 | 45.43 | MEDYHVAKFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPRGSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSKKGQEVQMSIDHEPNTERGSIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIKNADIDSDTELLILASDGLWKVMTNQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 45472452 | 45475982 | - | Lag0019785.1 | Lac5g2701 | 609343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2701 | 236 | Gene3D | - | 1 | 236 | IPR036457 | - | |
| Lac5g2701 | 236 | PANTHER | PROTEIN PHOSPHATASE | 1 | 232 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Lac5g2701 | 236 | FunFam | Probable protein phosphatase 2C 39 | 1 | 235 | - | - | |
| Lac5g2701 | 236 | Pfam | Protein phosphatase 2C | 14 | 227 | IPR001932 | - | |
| Lac5g2701 | 236 | SUPERFAMILY | PP2C-like | 1 | 235 | IPR036457 | - | |
| Lac5g2701 | 236 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 234 | IPR001932 | - | |
| Lac5g2701 | 236 | SMART | PP2C_4 | 2 | 232 | IPR001932 | - | |
| Lac5g2701 | 236 | CDD | PP2Cc | 1 | 234 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g1250 | Lac-Chr2:10223345 | Lac5g2701 | Lac-Chr5:45472452 | 7.30E-78 | dispersed | |
| Lac5g2701 | Lac-Chr5:45472452 | Lac5g3019 | Lac-Chr5:48090074 | 1.40E-48 | dispersed | |
| Lac5g2701 | Lac-Chr5:45472452 | Lac2g0725 | Lac-Chr2:5585682 | 2.20E-107 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac5g2701 | K17506 | - | csv:101214223 | 454.907 |