Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2704 ATGATCGAAGCTCAAGCCCTAATGACTTCTCTTAAGGTGGTATCCATTAGGCACTCTCCAAGACTCCATAATCATATGACCCATAAAGCCTATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGATCAAGAGACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAACCATATGGTCGGCCCGTTTGCACGGGCCGAGCTCGGTCACCTCTCTTCGGTCCCTAATGCCCCGAATCGCCCCGGTTTCGCCTGGTTCGCCCCGAAACGCCACCGAATTCCTGAAAAACCCTAGGAGGACAAACAGGCATCGGAGGCGGTGTGGCTTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTCCTACAAATTCACTGTTGGTGTCACGTGAAGGTCGGTTATCTGCGAAATGTGAACTCTGTACTCATAGCGTAAGCAGAAGAGGAGAGAGTTCATCTTCAATTCGTCCAATGGATTCCGTCTTCTCCGCCACGACGAGCAACATCGCCATATGTTGCGTTTCGAAGGCCTTGAATCGGAGACTGTCAGAAATTGTTCGTAGAAGATGTATTCACGGCGGTGGCCGAGCTCGCCGTTTCAGCTGCATTTCCAGTTACCTTGGCCTATACGGAACTGGACGCTGTGGTTCTTCCTCACCGTCGCTCAGGACTCTACAGGTTGTGCTTCCTTCGCTGCGGCGTCGTTTGCAGTGCGTTTCGAGCTCCTCTGTGTCTTTTGCATCTGGTGGCGGGAATGGTGGTCTTGGAGGGAAGAGTGGCGGCGGAGGTCGTGGTGGAGACGGTGGATTTGGCGGTGGAGATGCCAATAAGTTTGTTTCTAGCAGTGCTGAGGAGGTTTCTTCACTGTTGCCTAACGTGATTATACTGGATGTTGGAGGAATGACATGCGGGGGATGTGCTGCAAGTGTGAAGAGAATACTAGAAAATCAGCCACAAGTGTCATCTGCTAGTGTGAACCTCACAACAGAGACTGCAGTCATATGGCCTGTACCTGAGGCGAAAGATTCACCTCATTGGCTGAAGCGGCTGGGAGAGACGCTTGCTAATCACCTAACTCGGTGTGGTTTTGCATCTAGTCTTCGAGAGTCAGGAAGAGACAACATCTTCATGGTTTTTGAACGGAAGATGGAAGAAAAGCACACTCGTTTGAAAGAGAGTGGTCGCAATCTTGTTTTCTCCTGGGCTCTGTGTGCTGTGTGTCTCCTTGGCCACATTTCTCATTTCTTTGGTGCCAAGGCTTCATGGATCCATGCATTTCACACTACTCAATTCCATCTATCATTGTGCTTATTTACATTACTTGGCCCTGGTCGTCAACTCATTATTGATGGTATGAAAAGTCTTGTCAAAGGAGCTCCAAATATGAACACTTTAGTTGGTCTTGGAGCTCTATCATCATTTACTGTCAGCTCATTGGCTGCCTTAATACCAAAACTCGGTTGGAAGGCTTTCTTTGAGGAACCAGTTATGTTAATAGCATTTGTGTTATTAGGAAGGAATCTTGAACAGCGAGCTAAAATTAGAGCTGCAAGTGATATGACAGGACTTCTTAGTATTTTACCTTCAAAAGCTCGTCTAGTTGTTCATGGTGATACAGAATTGAGTTCAACAGTTGAAATTCCTTGTTCTAGTCTTTCAATTGGAGATGAAATTATTGTACTTCCTGGGGACCGTGTTCCTGCTGATGGAATTGTAAAATCTGGTAGAAGCATTGTGGATGAGTCGAGTTTCACTGGGGAGCCATTACCTGTTACCAAACTGCCAGGGAGCCAAGTTGCAGCAGGAACTATAAATCTTAATGGAACTCTTACAGTTGAGGTGCGTCGATCAGGAGGTGAGACTGCTATGGGAGATATTGTTCGTTTGGTAGAAGAGGCTCAAAGCCGGGAAGCTCCTGTTCAACGGTTGGCTGACAAGGTGTCTGGGCACTTCACTTATGGAGTAATGGCACTCTCCGCAGCAACTTTTATATTTTGGAGCCAATTTGGCTCACGCATTCTTCCTGCAGCTTTTGTTCACGGAAGTTCAGTTTCATTGGCTCTGCAGCTTTCTTGCAGTGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGCTTAGCTACGCCAACTGCAATGCTGGTTGGAACTTCTTTAGGTGCAACTAAAGGATTACTTTTGCGAGGTGGAAATATCTTGGAGCAGTTCTCAACGGTGGATACTGTTGTCTTTGACAAAACAGGGACTTTGACAGTTGGGAAACCTATTGTGACAAAGGTGTTGGCGACTTCAAAATATGAGACGAATGCAGATTCACAGATAAACTCACACAGCAATCATTCAGAAAATGAGATTCTCAAGTTTGCTGCTGCAGTGGAATCTAACACAGTTCACCCAGTTGGCAAGGCAATTGTGGAAGCTGCTCGAGCTGTTAATGGTCAGAATTTGAAGGTGGTTGAAGGAACATTCATTGAAGAACCTGGTTCTGGTGCTGTTGCTACAGTAGAAAACAGGATAATATCTGTTGGAACTTTGGACTGGGTTCAGAGGCATGGAGTTGTTGTCGATCATTTTCAAGAGACAGATGACCTCAAAGCTCAATCGGTCGTTTATGTTGGAATAGACAATCTTCTTGCTGGTCGTATTTATTATGAGGATGGCATCCGGGAAGATGCTAGTCATGTTGTTGACACTTTATCTAGGCAAGGAATTAACACGTACATGTTATCTGGGGACAAAAGGAGTAATGCTGAGTATGTTGCATCTCTTGTTGGGATTCCAAAAGAAAAGGTACGTTCTGGAGTTAAACCCCATGAAAAGAAGAAGTTTATTAGTGAACTTCAGGAGAACCACAACGTTGTAGCCATGGTTGGTGATGGAATCAACGATGCTGCTGCCTTGGCTACTGCAGATATTGGAATTGCGATGGGTGGGGGTGTTGGAGCTGCTAGTGAGGTGTCTCCTATTGTGTTAATGGGCAACAAACTCTCTCAGGTGCTTGATGCTTTGGAGCTTAGCAGGTTAACCATGAAGACCGTGAAGCAAAACCTTTGGTGGGCTTTTGGATACAACATCGTCGGGATTCCAATTGCCGCAGGCGTCTTGCTCCCTATAACCGGGACGATACTCACTCCATCCATTGCAGGTGCCCTTATGGGTCTGAGTTCTGTAGGAGTTATGGCAAATTCACTCCTTTTGAGATTAAGATTTTCTGAGAACAGAAAAAAATCTCTGGAAGACCAACAACCTAAAGAAAAATAG 3285 46.61 MIEAQALMTSLKVVSIRHSPRLHNHMTHKAYGQGADEDNRAEVGSRDRPRGRPDQRVGPTIWSARLHGPSSVTSLRSLMPRIAPVSPGSPRNATEFLKNPRRTNRHRRRCGLHHAGVQRFLLVLQVTSSPVPTNSLLVSREGRLSAKCELCTHSVSRRGESSSSIRPMDSVFSATTSNIAICCVSKALNRRLSEIVRRRCIHGGGRARRFSCISSYLGLYGTGRCGSSSPSLRTLQVVLPSLRRRLQCVSSSSVSFASGGGNGGLGGKSGGGGRGGDGGFGGGDANKFVSSSAEEVSSLLPNVIILDVGGMTCGGCAASVKRILENQPQVSSASVNLTTETAVIWPVPEAKDSPHWLKRLGETLANHLTRCGFASSLRESGRDNIFMVFERKMEEKHTRLKESGRNLVFSWALCAVCLLGHISHFFGAKASWIHAFHTTQFHLSLCLFTLLGPGRQLIIDGMKSLVKGAPNMNTLVGLGALSSFTVSSLAALIPKLGWKAFFEEPVMLIAFVLLGRNLEQRAKIRAASDMTGLLSILPSKARLVVHGDTELSSTVEIPCSSLSIGDEIIVLPGDRVPADGIVKSGRSIVDESSFTGEPLPVTKLPGSQVAAGTINLNGTLTVEVRRSGGETAMGDIVRLVEEAQSREAPVQRLADKVSGHFTYGVMALSAATFIFWSQFGSRILPAAFVHGSSVSLALQLSCSVLVVACPCALGLATPTAMLVGTSLGATKGLLLRGGNILEQFSTVDTVVFDKTGTLTVGKPIVTKVLATSKYETNADSQINSHSNHSENEILKFAAAVESNTVHPVGKAIVEAARAVNGQNLKVVEGTFIEEPGSGAVATVENRIISVGTLDWVQRHGVVVDHFQETDDLKAQSVVYVGIDNLLAGRIYYEDGIREDASHVVDTLSRQGINTYMLSGDKRSNAEYVASLVGIPKEKVRSGVKPHEKKKFISELQENHNVVAMVGDGINDAAALATADIGIAMGGGVGAASEVSPIVLMGNKLSQVLDALELSRLTMKTVKQNLWWAFGYNIVGIPIAAGVLLPITGTILTPSIAGALMGLSSVGVMANSLLLRLRFSENRKKSLEDQQPKEK 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45499992 45518156 + Lag0019788.1 Lac5g2704 609346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2704 1094 NCBIfam heavy metal translocating P-type ATPase 472 1074 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Lac5g2704 1094 CDD P-type_ATPase_HM 407 1073 - -
Lac5g2704 1094 FunFam Copper-transporting ATPase PAA1 chloroplastic 881 1032 - -
Lac5g2704 1094 Gene3D - 303 376 - -
Lac5g2704 1094 SUPERFAMILY HMA, heavy metal-associated domain 303 353 IPR036163 GO:0046872(InterPro)
Lac5g2704 1094 SUPERFAMILY Calcium ATPase, transduction domain A 553 640 IPR008250 -
Lac5g2704 1094 Coils Coil 1069 1089 - -
Lac5g2704 1094 FunFam Copper-transporting ATPase PAA1, chloroplastic 302 377 - -
Lac5g2704 1094 ProSiteProfiles Heavy-metal-associated domain profile. 302 369 IPR006121 GO:0046872(InterPro)
Lac5g2704 1094 MobiDBLite consensus disorder prediction 30 54 - -
Lac5g2704 1094 Pfam Heavy-metal-associated domain 306 350 IPR006121 GO:0046872(InterPro)
Lac5g2704 1094 SFLD p-type atpase 734 1015 IPR044492 -
Lac5g2704 1094 ProSitePatterns E1-E2 ATPases phosphorylation site. 753 759 IPR018303 -
Lac5g2704 1094 NCBIfam HAD-IC family P-type ATPase 800 1055 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac5g2704 1094 NCBIfam HAD-IC family P-type ATPase 510 777 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac5g2704 1094 CDD HMA 306 361 IPR006121 GO:0046872(InterPro)
Lac5g2704 1094 ProSitePatterns Hypothetical cof family signature 2. 965 987 - -
Lac5g2704 1094 Pfam E1-E2 ATPase 538 730 - -
Lac5g2704 1094 SFLD Haloacid Dehalogenase 734 1015 - -
Lac5g2704 1094 SUPERFAMILY Calcium ATPase, transmembrane domain M 506 1036 IPR023298 -
Lac5g2704 1094 Gene3D - 523 644 - -
Lac5g2704 1094 Gene3D - 762 896 IPR023299 GO:0000166(InterPro)
Lac5g2704 1094 PRINTS P-type cation-transporting ATPase superfamily signature 910 920 - -
Lac5g2704 1094 PRINTS P-type cation-transporting ATPase superfamily signature 751 765 - -
Lac5g2704 1094 PRINTS P-type cation-transporting ATPase superfamily signature 590 604 - -
Lac5g2704 1094 PRINTS P-type cation-transporting ATPase superfamily signature 988 1000 - -
Lac5g2704 1094 PRINTS P-type cation-transporting ATPase superfamily signature 965 984 - -
Lac5g2704 1094 PANTHER ATP7, ISOFORM B 390 1076 - GO:0005507(PANTHER)|GO:0016020(PANTHER)|GO:0043682(PANTHER)|GO:0055070(PANTHER)
Lac5g2704 1094 Gene3D - 742 1015 IPR023214 -
Lac5g2704 1094 FunFam Copper-transporting ATPase 1, putative 523 644 - -
Lac5g2704 1094 NCBIfam copper-translocating P-type ATPase 454 1075 - -
Lac5g2704 1094 MobiDBLite consensus disorder prediction 20 60 - -
Lac5g2704 1094 Pfam haloacid dehalogenase-like hydrolase 747 979 - -
Lac5g2704 1094 ProSitePatterns Heavy-metal-associated domain. 308 337 IPR017969 GO:0046872(InterPro)
Lac5g2704 1094 FunFam Copper-transporting ATPase PAA1 chloroplastic 762 896 - -
Lac5g2704 1094 SUPERFAMILY HAD-like 749 1071 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0247 Lac-Chr12:2727415 Lac5g2704 Lac-Chr5:45499992 1.40E-27 dispersed
Lac2g0496 Lac-Chr2:3613974 Lac5g2704 Lac-Chr5:45499992 4.30E-172 dispersed
Lac5g2704 Lac-Chr5:45499992 Lac9g1155 Lac-Chr9:27066782 1.00E-98 dispersed
Lac6g2287 Lac-Chr6:40109952 Lac5g2704 Lac-Chr5:45499992 1.40E-55 dispersed
Lac5g2704 Lac-Chr5:45499992 Lac3g0340 Lac-Chr3:2489555 1.60E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2704 K17686 - csv:101214702 1588.16