Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2713 ATGTCGGTGATGGTGGGTTCTTCGTCTTCTATATGGATCATTTCGGTGCTTTGTTTTGTTTCGCTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGCGTACTGCAGAGTTGGGATCCTACACTTGTTAATCCCTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGACCTTGGAAATGCAAATCTATCTGGCACGTTAGTTCCACAACTTGGTCAGCTTCGGAGTCTACAGTATTTGGAGCTCTATAGTAACAATATTACTGGAGGAATTCCGGAGGAGCTTGGGGAGTTGTCAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCCGTCACACTTGGCCAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTAACGGGAACTATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTTCTGGATCTTTCTTACAACCACCTAACTGGAGATATTCCGATCAATGGTTCCTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAATAACCTCAATGAGTCTGCTGTACGTCCTCCACCACCTCCTTTACCTTCTTCACCAACCCCCACATCAGGTAATACCGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCCGCTGCCGCTTTACTGTTTGCTGCTCCTGCTGTTGCAGTTGCTCTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTACGTGACCTACAAGTTGCAACAGATCATTTTAGCAACAAACAAATTCTAGGTAGAGGTGGTTTTGGCAAGGTCTATAAAGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTTAAAGAGGAACGTTCCCAAGGTGGGGAGTTGCAATTCCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGTCTGCGTGGCTTTTGTATGACACCAACTGAGCGGTTGCTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTAAGAGAACGTAAAGAAACACAGCCTCCACTTAATTGGTCAAATCGAAAACGCATTGCTTTGGGATCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAAATTATTCATCGTGATGTGAAAGCTGCAAACATTTTGCTTGATGAGGAGTTTGAAGCCGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCTGTACGTGGAACAATTGGGCATATTGCGCCTGAGTACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGACGTATTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCTTTTGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTCAAAGACAAGAGGTTGGAAACACTGGTTGATCCCGACCTTGAGGGAAACTATCCCAATGATGAAGTCGAGCAGCTTATTCAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACGGAGCGACCTAAGATGTCGGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCAGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTCCATCAAGAAGTAAGCCGCAATCCCCCAAGTACTACTTGGATTCTTGACTCTACTACTGAAATGCCTCCTGATGAATTGTCCGGTCCAAGATGA 1836 45.04 MSVMVGSSSSIWIISVLCFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGQLRSLQYLELYSNNITGGIPEELGELSNLVSLDLYLNNLTGPIPVTLGQLEKLRFLRLNNNSLTGTIPMSLTNVKSLQVLDLSYNHLTGDIPINGSFSLFTPISFAHNNLNESAVRPPPPPLPSSPTPTSGNTATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRDLQVATDHFSNKQILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERKETQPPLNWSNRKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLEGNYPNDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQEVSRNPPSTTWILDSTTEMPPDELSGPR 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45595236 45603789 - Lag0019797.1 Lac5g2713 609355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2713 611 Gene3D Transferase(Phosphotransferase) domain 1 366 583 - -
Lac5g2713 611 MobiDBLite consensus disorder prediction 200 223 - -
Lac5g2713 611 SUPERFAMILY L domain-like 27 202 - -
Lac5g2713 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2713 611 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Lac5g2713 611 ProSiteProfiles Protein kinase domain profile. 289 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2713 611 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Lac5g2713 611 Gene3D Ribonuclease Inhibitor 25 205 IPR032675 -
Lac5g2713 611 FunFam Somatic embryogenesis receptor-like kinase 1 366 583 - -
Lac5g2713 611 Pfam Protein tyrosine and serine/threonine kinase 292 563 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac5g2713 611 FunFam Somatic embryogenesis receptor kinase 1 258 365 - -
Lac5g2713 611 SUPERFAMILY Protein kinase-like (PK-like) 268 564 IPR011009 -
Lac5g2713 611 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 610 - -
Lac5g2713 611 SMART serkin_6 289 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac5g2713 611 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524(InterPro)
Lac5g2713 611 MobiDBLite consensus disorder prediction 581 611 - -
Lac5g2713 611 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Lac5g2713 611 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Lac5g2713 611 Pfam Leucine Rich Repeat 165 181 IPR001611 GO:0005515(InterPro)
Lac5g2713 611 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515(InterPro)
Lac5g2713 611 Gene3D Phosphorylase Kinase; domain 1 258 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0267 Lac-Chr12:2947561 Lac5g2713 Lac-Chr5:45595236 2.90E-166 dispersed
Lac4g2122 Lac-Chr4:40818550 Lac5g2713 Lac-Chr5:45595236 1.10E-26 dispersed
Lac5g2024 Lac-Chr5:38675701 Lac5g2713 Lac-Chr5:45595236 6.70E-204 dispersed
Lac5g2713 Lac-Chr5:45595236 Lac6g1302 Lac-Chr6:13140525 4.50E-136 dispersed
Lac5g2713 Lac-Chr5:45595236 Lac2g2300 Lac-Chr2:31343464 9.10E-222 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86223 PF00069 Pkinase 8.80E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2713 K13416 - csv:101216389 1063.14