Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac5g2716 ATGGGTACAAGAACTCAGCAACCATGCCGTGAAGACGACGATGACGACCTACCGGCTGGCCCTGCTGCCACCACAATTTCCGGTCAGTCTGTTTCCATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCCACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGGAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTTGCAGATGAACTTGTTGCAGAGTTTGCTGATCCTGGCAACAGTCTTGCGACACCAGATCAGCAACAGTACGATGAGAAAAATATCAGGCGTAGGGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCCTGAATGACATCGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATCGAAAAGAAAGCAGCGTACTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAGTTCTGAGAATGCTCCCAGTGGAGGCGTGTCCTTACCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATATCAGAAGATATGCAGTTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAATGCGATAATACGGCGCAAAATTTTACTCCTGATGGCGGGGAGGGTTCTAGCATGTTGGGCATGTATCAACAACCCCAGATCCCACTTCCTTCAATATCCAACACGCCCGTTAGAACTCCAACCTCGCCACCACTTCCCGGAATTATAAAAGCTCGTGTCAAACACGAACATTGA 1044 48.47 MGTRTQQPCREDDDDDLPAGPAATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMLGMYQQPQIPLPSISNTPVRTPTSPPLPGIIKARVKHEH 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45627854 45632707 + Lag0019800.1 Lac5g2716 609358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac5g2716 347 Pfam Transcription factor DP 183 288 IPR014889 -
Lac5g2716 347 MobiDBLite consensus disorder prediction 1 95 - -
Lac5g2716 347 PIRSF Txn_factor_DP 5 347 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Lac5g2716 347 SMART DP_2 182 345 IPR014889 -
Lac5g2716 347 Gene3D Transcription factor DP 181 302 IPR038168 -
Lac5g2716 347 SUPERFAMILY E2F-DP heterodimerization region 181 294 IPR037241 -
Lac5g2716 347 SUPERFAMILY Winged helix DNA-binding domain 95 176 IPR036390 -
Lac5g2716 347 MobiDBLite consensus disorder prediction 23 60 - -
Lac5g2716 347 Coils Coil 191 225 - -
Lac5g2716 347 Pfam E2F/DP family winged-helix DNA-binding domain 95 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac5g2716 347 PANTHER TRANSCRIPTION FACTOR DP 22 307 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Lac5g2716 347 FunFam Transcription factor-like protein DPB 181 306 - -
Lac5g2716 347 Gene3D - 88 180 IPR036388 -
Lac5g2716 347 SMART E2F_TDP_2 92 175 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Lac5g2716 347 CDD DP_DD 180 283 IPR014889 -
Lac5g2716 347 FunFam Transcription factor-like protein DPB 87 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac5g2716 K04683 - - csv:101216863 650.588
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac5g2716 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 1.6e-59 227.3
Lac9g2731 . 12 398 E2F-DP Transcription Factor Family AT5G22220 58.2 1.6e-106 384.0
Lac1g2307 . 11 449 E2F-DP Transcription Factor Family AT2G36010 55.7 2.5e-121 433.3
Lac9g2731 . 17 393 E2F-DP Transcription Factor Family AT2G36010 58.1 2.0e-110 397.1
Lac6g0492 . 151 405 E2F-DP Transcription Factor Family AT1G47870 55.3 2.6e-68 256.9
Lac9g2731 . 91 367 E2F-DP Transcription Factor Family AT1G47870 51.3 5.6e-63 239.2
Lac10g0417 . 3 369 E2F-DP Transcription Factor Family AT3G48160 56.1 3.0e-104 376.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23913 PF08781 DP 3.40E-41 No_clan Lac TF