Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac5g2716 | ATGGGTACAAGAACTCAGCAACCATGCCGTGAAGACGACGATGACGACCTACCGGCTGGCCCTGCTGCCACCACAATTTCCGGTCAGTCTGTTTCCATGAGTGGCAGTGTCGGTTCTCCTTCTAGCCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCGGGGTCGCAAGGACCCACTGCTAACGTGAAGAAAAAGAGGGGTCAGCGTGCTGTTGGAGGGGACAAGAGTGGGAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTTGCAGATGAACTTGTTGCAGAGTTTGCTGATCCTGGCAACAGTCTTGCGACACCAGATCAGCAACAGTACGATGAGAAAAATATCAGGCGTAGGGTATATGATGCCCTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAGAAAGAGATACAATGGAAGGGTCTGCCACGTACCAGCCTGAATGACATCGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATCGAAAAGAAAGCAGCGTACTTGCAAGAGCTGGAGGAACAGTATGTAGGCCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAGTTCTGAGAATGCTCCCAGTGGAGGCGTGTCCTTACCTTTCATCCTGGTGCAGACACGGCCTCATGCAACTGTTGAGATAGAAATATCAGAAGATATGCAGTTGGTGCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTACGTTTTGAAGGCAATGAAATTTTGCGACAGACCGCAATGCGATAATACGGCGCAAAATTTTACTCCTGATGGCGGGGAGGGTTCTAGCATGTTGGGCATGTATCAACAACCCCAGATCCCACTTCCTTCAATATCCAACACGCCCGTTAGAACTCCAACCTCGCCACCACTTCCCGGAATTATAAAAGCTCGTGTCAAACACGAACATTGA | 1044 | 48.47 | MGTRTQQPCREDDDDDLPAGPAATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGSQGPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFTPDGGEGSSMLGMYQQPQIPLPSISNTPVRTPTSPPLPGIIKARVKHEH | 347 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 45627854 | 45632707 | + | Lag0019800.1 | Lac5g2716 | 609358 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac5g2716 | 347 | Pfam | Transcription factor DP | 183 | 288 | IPR014889 | - | |
Lac5g2716 | 347 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
Lac5g2716 | 347 | PIRSF | Txn_factor_DP | 5 | 347 | IPR015648 | GO:0005667(InterPro)|GO:0051726(InterPro) | |
Lac5g2716 | 347 | SMART | DP_2 | 182 | 345 | IPR014889 | - | |
Lac5g2716 | 347 | Gene3D | Transcription factor DP | 181 | 302 | IPR038168 | - | |
Lac5g2716 | 347 | SUPERFAMILY | E2F-DP heterodimerization region | 181 | 294 | IPR037241 | - | |
Lac5g2716 | 347 | SUPERFAMILY | Winged helix DNA-binding domain | 95 | 176 | IPR036390 | - | |
Lac5g2716 | 347 | MobiDBLite | consensus disorder prediction | 23 | 60 | - | - | |
Lac5g2716 | 347 | Coils | Coil | 191 | 225 | - | - | |
Lac5g2716 | 347 | Pfam | E2F/DP family winged-helix DNA-binding domain | 95 | 175 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lac5g2716 | 347 | PANTHER | TRANSCRIPTION FACTOR DP | 22 | 307 | IPR015648 | GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro) | |
Lac5g2716 | 347 | FunFam | Transcription factor-like protein DPB | 181 | 306 | - | - | |
Lac5g2716 | 347 | Gene3D | - | 88 | 180 | IPR036388 | - | |
Lac5g2716 | 347 | SMART | E2F_TDP_2 | 92 | 175 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Lac5g2716 | 347 | CDD | DP_DD | 180 | 283 | IPR014889 | - | |
Lac5g2716 | 347 | FunFam | Transcription factor-like protein DPB | 87 | 180 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23913 | PF08781 | DP | 3.40E-41 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac5g2716 | K04683 | - | csv:101216863 | 650.588 |