Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac5g2755 | ATGTTTCAAGGGTTTGTTTTCAGCTTAAATGACGTGTACGGCCACGATATCTCCGCCGTGTCTCTGCCGGAATTCACCGTCAGCCGCTTAACGGAACATGTCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACGCTTACAAGATCCAACGGTGCCCAAGAACCCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGTTTCAACTACACCGCCGTCGCCTGCCCGGCTTTCCGGACGGGCAGCTGCCCGAAGGGCGATTTTTGTGAATTCGCTCATGGGGTTTTCGAGTTCTGGCTCCACCCGGCCCGGTACCGGACCCGGGCTTGCAATGCGGGCCGGTTTTGCCAACGGAAAGTTTGCTTTTTTGCTCACTCGCCGGAGGAGCTCCGCCCGGAGACCAAACTGAAGTTTAATTTCAATGCTTTCCGGCCGCGTGCGGCGGTGGTCGCCGTTGAAGGTACTGTGGAGAGGGAGAACGACGGAGTTCTGGAAACTCCGGCGAGGGAGAACGGCGGCGGGCGGCGGGGAAATGAAGGGAGTTATGGATTGGAGCCGTCGGAGTTGGAGTTGCCGCATATTGAATGGATATCGGAATTGTTGCAGTAA | 654 | 58.26 | MFQGFVFSLNDVYGHDISAVSLPEFTVSRLTEHVDDTAVFSSDEFRMYAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRTGSCPKGDFCEFAHGVFEFWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKFNFNAFRPRAAVVAVEGTVERENDGVLETPARENGGGRRGNEGSYGLEPSELELPHIEWISELLQ | 217 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 45962772 | 45963425 | + | Lag0019839.1 | Lac5g2755 | 609397 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac5g2755 | 217 | Gene3D | - | 81 | 153 | - | - | |
| Lac5g2755 | 217 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 88 | 109 | IPR000571 | GO:0046872(InterPro) | |
| Lac5g2755 | 217 | SUPERFAMILY | CCCH zinc finger | 84 | 114 | IPR036855 | GO:0046872(InterPro) | |
| Lac5g2755 | 217 | MobiDBLite | consensus disorder prediction | 175 | 200 | - | - | |
| Lac5g2755 | 217 | SMART | c3hfinal6 | 119 | 142 | IPR000571 | GO:0046872(InterPro) | |
| Lac5g2755 | 217 | SMART | c3hfinal6 | 84 | 110 | IPR000571 | GO:0046872(InterPro) | |
| Lac5g2755 | 217 | ProSiteProfiles | Zinc finger C3H1-type profile. | 84 | 111 | IPR000571 | GO:0046872(InterPro) | |
| Lac5g2755 | 217 | PANTHER | UNKEMPT FAMILY MEMBER | 37 | 148 | IPR045234 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g0988 | Lac-Chr3:8046319 | Lac5g2755 | Lac-Chr5:45962772 | 5.00E-45 | dispersed | |
| Lac5g2755 | Lac-Chr5:45962772 | Lac6g3056 | Lac-Chr6:48163544 | 5.80E-46 | dispersed | |
| Lac5g2755 | Lac-Chr5:45962772 | Lac12g0742 | Lac-Chr12:7759172 | 6.80E-47 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23917 | PF00642 | zf-CCCH | 4.80E-06 | CL0537 | Lac | TF |
Pathway information